Conservation of cofitness between Psest_1949 and Psest_3708 in Pseudomonas stutzeri RCH2

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1949 Predicted N6-adenine-specific DNA methylase 1.0 Psest_3708 Arabinose efflux permease 0.31 3
Pseudomonas sp. S08-1 0.84 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase 0.10 OH686_23535 Uncharacterized MFS-type transporter low > 80
Pseudomonas simiae WCS417 0.84 PS417_20930 50S rRNA methyltransferase 0.66 PS417_02015 membrane protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.67 PFLU_RS02060 MFS transporter low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.66 Psyr_0420 General substrate transporter:Major facilitator superfamily low > 86
Pseudomonas fluorescens SBW25 0.84 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.67 PFLU_RS02060 MFS transporter low > 109
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.66 Psyr_0420 General substrate transporter:Major facilitator superfamily low > 86
Pseudomonas putida KT2440 0.84 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.68 PP_5072 efflux transporter low > 96
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.68 PfGW456L13_256 Permeases of the major facilitator superfamily low > 87
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_02605 50S rRNA methyltransferase 0.69 AO356_09295 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.69 Pf1N1B4_1531 Permeases of the major facilitator superfamily low > 87
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.67 Pf6N2E2_3736 Permeases of the major facilitator superfamily low > 103
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_00775 50S rRNA methyltransferase 0.70 AO353_12595 hypothetical protein low > 101
Pseudomonas sp. RS175 0.82 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L 0.69 PFR28_05018 Inner membrane transport protein YnfM low > 88
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.49 ABZR86_RS07785 MFS transporter low > 74
Rhodanobacter denitrificans MT42 0.44 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.44 LRK55_RS16025 MFS transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.44 LRK54_RS16275 MFS transporter low > 59
Escherichia coli ECRC62 0.43 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 BNILDI_17025 ynfM Inner membrane transport protein YnfM low > 75
Escherichia coli Nissle 1917 0.43 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 ECOLIN_RS08915 MFS transporter low > 55
Escherichia coli ECOR27 0.43 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 NOLOHH_18235 araJ MFS transporter low > 75
Escherichia fergusonii Becca 0.43 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L 0.58 EFB2_02396 Inner membrane transport protein YnfM low > 86
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.45 OKGIIK_08395 araJ MFS transporter low > 52
Escherichia coli ECRC101 0.42 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 MCAODC_17680 ynfM Inner membrane transport protein YnfM low > 87
Escherichia coli ECRC100 0.42 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 OKFHMN_27730 ynfM Inner membrane transport protein YnfM low > 80
Escherichia coli ECRC102 0.42 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 NIAGMN_00345 ynfM Inner membrane transport protein YnfM — —
Escherichia coli ECRC99 0.42 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 KEDOAH_00375 araJ MFS transporter — —
Escherichia coli BL21 0.42 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent 0.58 ECD_01565 putative arabinose efflux transporter low > 61
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 0.23 CSW01_08135 MFS transporter low > 62
Escherichia coli BW25113 0.42 b0948 ycbY predicted methyltransferase (NCBI) 0.58 b1596 ynfM predicted transporter (NCBI) low > 76
Escherichia coli ECRC98 0.42 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 JDDGAC_02320 ynfM Inner membrane transport protein YnfM low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L 0.58 OHPLBJKB_02130 Inner membrane transport protein YnfM low > 73
Escherichia coli ECOR38 0.42 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 HEPCGN_06105 ynfM Inner membrane transport protein YnfM low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.54 GFF1787 Permeases of the major facilitator superfamily low > 78
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.36 Xcc-8004.387.1 Permeases of the major facilitator superfamily low > 74
Enterobacter sp. TBS_079 0.42 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L 0.57 MPMX20_02061 Inner membrane transport protein YnfM low > 85
Klebsiella michiganensis M5al 0.42 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase 0.56 BWI76_RS15965 MFS transporter low > 92
Dickeya dadantii 3937 0.42 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.52 DDA3937_RS10665 MFS transporter low > 74
Shewanella loihica PV-4 0.41 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.23 Shew_1441 major facilitator transporter (RefSeq) low > 60
Dickeya dianthicola ME23 0.41 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.51 DZA65_RS11135 MFS transporter low > 75
Pectobacterium carotovorum WPP14 0.41 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.56 HER17_RS10745 MFS transporter low > 75
Enterobacter asburiae PDN3 0.41 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase 0.55 EX28DRAFT_1495 Arabinose efflux permease low > 76
Dickeya dianthicola 67-19 0.41 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.52 HGI48_RS10665 MFS transporter 0.45 36
Shewanella oneidensis MR-1 0.41 SO1851 conserved hypothetical protein (NCBI ptt file) 0.21 SO1917 multidrug resistance protein, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.21 Shewana3_1692 Xaa-His dipeptidase (RefSeq) low > 73
Serratia liquefaciens MT49 0.41 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.57 IAI46_11675 MFS transporter low > 86
Shewanella amazonensis SB2B 0.40 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.20 Sama_2214 multidrug resistance protein, putative (RefSeq) low > 62
Pantoea sp. MT58 0.40 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.56 IAI47_09740 MFS transporter low > 76
Rahnella sp. WP5 0.40 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.53 EX31_RS16995 MFS transporter low > 89
Acinetobacter radioresistens SK82 0.40 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L 0.40 MPMX26_00126 Inner membrane transport protein YnfM — —

Not shown: 5 genomes with orthologs for Psest_1949 only; 26 genomes with orthologs for Psest_3708 only