Conservation of cofitness between GFF3028 and GFF3567 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF3028 Transketolase (EC 2.2.1.1) 1.0 GFF3567 Pyruvate kinase (EC 2.7.1.40) 0.84 5
Klebsiella michiganensis M5al 0.97 BWI76_RS24015 transketolase 0.96 BWI76_RS16960 pyruvate kinase — —
Escherichia coli ECRC101 0.97 MCAODC_09845 tkt transketolase 0.96 MCAODC_18120 pykF pyruvate kinase PykF — —
Escherichia coli ECOR38 0.97 HEPCGN_18630 tkt transketolase 0.96 HEPCGN_05675 pykF pyruvate kinase PykF — —
Escherichia coli ECRC100 0.97 OKFHMN_19325 tkt transketolase 0.96 OKFHMN_27290 pykF pyruvate kinase PykF — —
Escherichia coli ECRC98 0.97 JDDGAC_22955 tkt transketolase 0.96 JDDGAC_01865 pykF pyruvate kinase PykF — —
Escherichia coli BL21 0.97 ECD_02765 transketolase 1, thiamine triphosphate-binding 0.96 ECD_01645 pyruvate kinase I low > 61
Escherichia coli ECRC62 0.97 BNILDI_09775 tkt transketolase 0.96 BNILDI_16600 pykF pyruvate kinase PykF low > 75
Escherichia coli BW25113 0.97 b2935 tktA transketolase 1, thiamin-binding (NCBI) 0.96 b1676 pykF pyruvate kinase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_00781 Transketolase 1 0.96 OHPLBJKB_02048 Pyruvate kinase I — —
Escherichia coli ECRC102 0.97 NIAGMN_17090 tkt transketolase 0.96 NIAGMN_00775 pykF pyruvate kinase PykF — —
Escherichia coli ECRC99 0.97 KEDOAH_08815 tkt transketolase 0.96 KEDOAH_00820 pykF pyruvate kinase PykF — —
Escherichia fergusonii Becca 0.97 EFB2_00966 Transketolase 1 0.96 EFB2_02316 Pyruvate kinase I low > 86
Escherichia coli ECOR27 0.97 NOLOHH_11230 tkt transketolase 0.96 NOLOHH_17810 pykF pyruvate kinase PykF low > 75
Enterobacter sp. TBS_079 0.96 MPMX20_03780 Transketolase 1 0.97 MPMX20_01951 Pyruvate kinase I low > 85
Escherichia coli Nissle 1917 0.96 ECOLIN_RS16330 transketolase 0.96 ECOLIN_RS09375 pyruvate kinase PykF 0.61 22
Enterobacter asburiae PDN3 0.95 EX28DRAFT_2974 transketolase, bacterial and yeast 0.97 EX28DRAFT_1679 pyruvate kinase 0.65 44
Erwinia tracheiphila SCR3 0.88 LU632_RS05520 tkt transketolase 0.87 LU632_RS11145 pykF pyruvate kinase PykF low > 74
Pantoea sp. MT58 0.87 IAI47_03680 transketolase 0.88 IAI47_10840 pyruvate kinase PykF 0.31 63
Dickeya dadantii 3937 0.87 DDA3937_RS18525 transketolase 0.87 DDA3937_RS12740 pyruvate kinase PykF — —
Dickeya dianthicola ME23 0.87 DZA65_RS19585 transketolase 0.86 DZA65_RS13270 pyruvate kinase PykF — —
Dickeya dianthicola 67-19 0.87 HGI48_RS18450 transketolase 0.86 HGI48_RS12805 pyruvate kinase PykF — —
Pectobacterium carotovorum WPP14 0.86 HER17_RS02680 transketolase 0.86 HER17_RS08960 pyruvate kinase PykF low > 75
Serratia liquefaciens MT49 0.86 IAI46_21045 transketolase 0.89 IAI46_11185 pyruvate kinase PykF — —
Rahnella sp. WP5 0.84 EX31_RS21400 transketolase 0.89 EX31_RS13870 pyruvate kinase PykF low > 89
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_02515 transketolase 0.77 CSW01_02575 pyruvate kinase PykF — —
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS28095 transketolase 0.31 PFLU_RS08850 pyruvate kinase — —
Pseudomonas fluorescens SBW25 0.75 PFLU_RS28095 transketolase 0.31 PFLU_RS08850 pyruvate kinase — —
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_07955 transketolase 0.31 AO353_01940 pyruvate kinase — —
Pseudomonas simiae WCS417 0.75 PS417_26440 transketolase 0.31 PS417_08790 pyruvate kinase — —
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4655 Transketolase (EC 2.2.1.1) 0.30 Pf6N2E2_5835 Pyruvate kinase (EC 2.7.1.40) — —
Pseudomonas sp. RS175 0.74 PFR28_04188 Transketolase 1 0.31 PFR28_03114 Pyruvate kinase — —
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_13680 transketolase 0.31 AO356_19600 pyruvate kinase — —
Pseudomonas putida KT2440 0.74 PP_4965 transketolase A 0.32 PP_4301 Pyruvate kinase — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2397 Transketolase (EC 2.2.1.1) 0.31 Pf1N1B4_3657 Pyruvate kinase (EC 2.7.1.40) — —
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1064 Transketolase (EC 2.2.1.1) 0.31 PfGW456L13_4299 Pyruvate kinase (EC 2.7.1.40) — —
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS17575 transketolase 0.33 RR42_RS19870 pyruvate kinase — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS05870 transketolase 0.32 RALBFv3_RS17015 pyruvate kinase — —
Desulfovibrio vulgaris Miyazaki F 0.64 DvMF_0976 transketolase (RefSeq) 0.28 DvMF_0965 pyruvate kinase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.62 DVU2530 tkt transketolase (TIGR) 0.27 DVU2514 pyk pyruvate kinase (TIGR) — —
Castellaniella sp019104865 MT123 0.61 ABCV34_RS15450 transketolase 0.32 ABCV34_RS12115 pyruvate kinase — —
Azospirillum sp. SherDot2 0.58 MPMX19_02942 Transketolase 1 0.33 MPMX19_04074 Pyruvate kinase low > 112
Rhodospirillum rubrum S1H 0.57 Rru_A2405 transketolase (NCBI) 0.32 Rru_A2465 Pyruvate kinase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.48 Ga0059261_0731 transketolase, bacterial and yeast 0.30 Ga0059261_0685 pyruvate kinase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS02950 transketolase 0.33 ABZR88_RS01590 pyruvate kinase — —
Azospirillum brasilense Sp245 0.47 AZOBR_RS09010 transketolase 0.31 AZOBR_RS06845 pyruvate kinase — —
Caulobacter crescentus NA1000 0.44 CCNA_03735 transketolase 0.28 CCNA_02130 pyruvate kinase — —
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_03735 transketolase 0.28 CCNA_02130 pyruvate kinase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS00780 transketolase 0.26 A4249_RS02440 pyruvate kinase — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS04450 transketolase 0.35 HMPREF1181_RS01240 pyruvate kinase — —
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS08725 transketolase 0.34 HMPREF1078_RS04695 pyruvate kinase — —

Not shown: 39 genomes with orthologs for GFF3028 only; 13 genomes with orthologs for GFF3567 only