Conservation of cofitness between GFF1806 and GFF3348 in Hydrogenophaga sp. GW460-11-11-14-LB1

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 1.0 GFF3348 DNA recombination and repair protein RecO 0.77 7
Variovorax sp. OAS795 0.70 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.40 ABID97_RS08375 DNA repair protein RecO low > 91
Variovorax sp. SCN45 0.69 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.41 GFF3872 DNA recombination and repair protein RecO low > 127
Acidovorax sp. GW101-3H11 0.67 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.40 Ac3H11_1564 DNA recombination and repair protein RecO — —
Dechlorosoma suillum PS 0.46 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.22 Dsui_2462 DNA repair protein RecO low > 51
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS21530 cytochrome C550 0.31 HSERO_RS09670 DNA repair protein RecO low > 78
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS01680 cytochrome C550 0.30 RR42_RS14030 DNA recombination protein RecO low > 128
Ralstonia solanacearum PSI07 0.42 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.31 RPSI07_RS18965 DNA repair protein RecO low > 81
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.20 ABZR86_RS07140 DNA repair protein RecO — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.29 ABZR87_RS10215 DNA repair protein RecO low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.31 RS_RS05275 DNA repair protein RecO low > 80
Rhodanobacter denitrificans MT42 0.40 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.19 LRK55_RS16695 DNA repair protein RecO — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.19 LRK54_RS16980 DNA repair protein RecO low > 59
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.19 OKGIIK_07860 recO DNA repair protein RecO — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.31 RALBFv3_RS14495 DNA repair protein RecO low > 76
Ralstonia solanacearum UW163 0.40 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.31 UW163_RS11960 DNA repair protein RecO — —
Lysobacter sp. OAE881 0.39 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.21 ABIE51_RS13850 DNA repair protein RecO low > 62
Pseudomonas stutzeri RCH2 0.39 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.17 Psest_3090 DNA repair protein RecO low > 67
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.15 AO356_17505 DNA repair protein RecO low > 104
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.16 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.24 102
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.15 PfGW456L13_4838 DNA recombination and repair protein RecO — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.15 AO353_04500 DNA repair protein RecO low > 101
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.16 Pf1N1B4_890 DNA recombination and repair protein RecO — —
Pseudomonas sp. S08-1 0.36 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.13 OH686_20090 DNA repair protein RecO low > 80
Acinetobacter radioresistens SK82 0.36 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.13 MPMX26_02153 DNA repair protein RecO low > 36
Escherichia coli BL21 0.35 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 0.19 ECD_02459 gap repair protein low > 61
Escherichia coli Nissle 1917 0.35 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.19 ECOLIN_RS14520 DNA repair protein RecO — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 0.19 OHPLBJKB_01142 DNA repair protein RecO low > 73
Escherichia coli ECRC99 0.35 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 KEDOAH_06800 recO DNA repair protein RecO — —
Escherichia coli ECRC102 0.35 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 NIAGMN_19190 recO DNA repair protein RecO — —
Escherichia coli ECOR38 0.35 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 HEPCGN_20565 recO DNA repair protein RecO low > 87
Escherichia coli BW25113 0.35 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 0.19 b2565 recO DNA repair protein RecO (NCBI) low > 76
Escherichia coli ECRC100 0.35 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 OKFHMN_21420 recO DNA repair protein RecO 0.65 17
Escherichia coli ECRC62 0.35 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 BNILDI_11895 recO DNA repair protein RecO low > 75
Escherichia coli ECOR27 0.35 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 NOLOHH_13095 recO DNA repair protein RecO low > 75
Escherichia coli ECRC101 0.35 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 MCAODC_11950 recO DNA repair protein RecO low > 87
Escherichia coli ECRC98 0.35 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.19 JDDGAC_25085 recO DNA repair protein RecO low > 86
Escherichia fergusonii Becca 0.35 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 0.19 EFB2_01331 DNA repair protein RecO low > 86
Pectobacterium carotovorum WPP14 0.34 HER17_RS12545 serine hydrolase 0.18 HER17_RS05825 DNA repair protein RecO low > 75
Dickeya dianthicola 67-19 0.34 HGI48_RS09435 serine hydrolase 0.19 HGI48_RS15810 DNA repair protein RecO low > 71
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.20 EX28DRAFT_0081 DNA replication and repair protein RecO 0.55 19
Dickeya dianthicola ME23 0.34 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.18 DZA65_RS16890 DNA repair protein RecO low > 75
Alteromonas macleodii MIT1002 0.33 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.17 MIT1002_00790 Recombination protein O — —
Enterobacter sp. TBS_079 0.33 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.15 MPMX20_03436 DNA repair protein RecO low > 85
Dickeya dadantii 3937 0.33 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.18 DDA3937_RS15725 DNA repair protein RecO low > 74
Rahnella sp. WP5 0.33 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.21 EX31_RS21845 DNA repair protein RecO low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.21 GFF2473 DNA recombination and repair protein RecO low > 78
Klebsiella michiganensis M5al 0.33 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.20 BWI76_RS21310 DNA repair protein RecO low > 92
Erwinia tracheiphila SCR3 0.33 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.18 LU632_RS15375 recO DNA repair protein RecO low > 74
Serratia liquefaciens MT49 0.32 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.19 IAI46_19540 DNA repair protein RecO low > 86
Shewanella amazonensis SB2B 0.32 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.14 Sama_0882 DNA repair protein RecO (RefSeq) — —

Not shown: 31 genomes with orthologs for GFF1806 only; 0 genomes with orthologs for GFF3348 only