Conservation of cofitness between GFF776 and GFF3048 in Sphingobium sp. HT1-2

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF776 RNA polymerase sigma-54 factor RpoN 1.0 GFF3048 Two-component nitrogen fixation transcriptional regulator FixJ 0.93 16
Sinorhizobium meliloti 1021 0.44 SMc01139 RNA polymerase factor sigma-54 0.48 SMa1227 response regulator FixJ low > 103
Rhodopseudomonas palustris CGA009 0.40 TX73_000260 RNA polymerase factor sigma-54 0.45 TX73_022010 response regulator FixJ — —
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS16075 RNA polymerase factor sigma-54 0.41 A4249_RS15535 response regulator — —
Azospirillum sp. SherDot2 0.40 MPMX19_02668 RNA polymerase sigma-54 factor 2 0.44 MPMX19_03016 Response regulator protein TmoT — —
Pseudomonas putida KT2440 0.30 PP_0952 RNA polymerase sigma-54 factor 0.38 PP_3551 DNA-binding response regulator, LuxR family — —
Pseudomonas segetis P6 0.29 MPMX49_03858 RNA polymerase sigma-54 factor 0.37 MPMX49_02030 Response regulator protein TodT — —
Pseudomonas aeruginosa PA14 0.29 IKLFDK_01770 RNA polymerase factor sigma-54 0.37 IKLFDK_21605 two-component system response regulator BfiR — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_5014 RNA polymerase sigma-54 factor RpoN 0.38 PfGW456L13_3749 Nitrogen regulation protein NR(I) — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_07035 RNA polymerase sigma-54 factor 0.36 AO356_25435 nodulation protein NolW — —
Serratia liquefaciens MT49 0.28 IAI46_22470 RNA polymerase factor sigma-54 0.33 IAI46_06840 response regulator transcription factor low > 87
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS02905 RNA polymerase subunit sigma-54 0.41 BPHYT_RS12850 LuxR family transcriptional regulator — —
Dechlorosoma suillum PS 0.26 Dsui_0704 RNA polymerase sigma-54 factor 0.41 Dsui_2511 response regulator low > 51
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_01927 RNA polymerase, sigma 54 subunit, RpoN/SigL 0.41 H281DRAFT_00464 two component transcriptional regulator, LuxR family — —
Paraburkholderia graminis OAS925 0.26 ABIE53_000718 RNA polymerase sigma-54 factor 0.41 ABIE53_002795 FixJ family two-component response regulator — —
Cupriavidus basilensis FW507-4G11 0.26 RR42_RS02085 RNA polymerase subunit sigma-54 0.42 RR42_RS07355 LuxR family transcriptional regulator — —
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS19855 RNA polymerase subunit sigma-54 0.37 HSERO_RS06700 LuxR family transcriptional regulator — —
Marinobacter adhaerens HP15 0.26 HP15_2442 RNA polymerase, sigma 54 subunit, RpoN 0.44 HP15_1053 two component transcriptional regulator, LuxR family low > 73
Ralstonia solanacearum PSI07 0.26 RPSI07_RS07850 RNA polymerase factor sigma-54 0.41 RPSI07_RS15805 DNA-binding response regulator — —
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS23535 RNA polymerase factor sigma-54 0.41 ABZR87_RS13480 response regulator transcription factor — —
Shewanella oneidensis MR-1 0.25 SO3961 rpoN RNA polymerase sigma-54 factor (NCBI ptt file) 0.39 SO4157 DNA-binding response regulator (NCBI ptt file) low > 76
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS01755 RNA polymerase factor sigma-54 0.41 QEN71_RS05715 oxygen response regulator transcription factor FixJ — —
Shewanella amazonensis SB2B 0.25 Sama_3088 RNA polymerase factor sigma-54 (RefSeq) 0.36 Sama_3183 response regulator receiver protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_0672 RNA polymerase factor sigma-54 (RefSeq) 0.39 Shewana3_3697 two component LuxR family transcriptional regulator (RefSeq) low > 73
Shewanella loihica PV-4 0.25 Shew_3311 RNA polymerase factor sigma-54 (RefSeq) 0.41 Shew_3240 two component LuxR family transcriptional regulator (RefSeq) low > 60
Ralstonia solanacearum GMI1000 0.25 RS_RS25120 RNA polymerase sigma-54 factor 0.41 RS_RS08045 DNA-binding response regulator low > 80
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS19815 RNA polymerase factor sigma-54 0.39 ABZR86_RS13745 response regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF3068 RNA polymerase sigma-54 factor RpoN 0.39 GFF4893 Nitrogen regulation protein NR(I) low > 90
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS11170 RNA polymerase sigma-54 factor 0.41 RALBFv3_RS01680 DNA-binding response regulator — —
Ralstonia solanacearum UW163 0.25 UW163_RS02410 RNA polymerase sigma-54 factor 0.41 UW163_RS14990 DNA-binding response regulator — —
Acidovorax sp. GW101-3H11 0.24 Ac3H11_727 RNA polymerase sigma-54 factor RpoN 0.38 Ac3H11_4095 Nitrogen regulation protein NR(I) low > 79
Variovorax sp. OAS795 0.23 ABID97_RS04780 RNA polymerase factor sigma-54 0.39 ABID97_RS14090 response regulator transcription factor — —
Variovorax sp. SCN45 0.23 GFF6290 RNA polymerase sigma-54 factor RpoN 0.39 GFF965 Two-component transcriptional response regulator, LuxR family — —
Castellaniella sp019104865 MT123 0.20 ABCV34_RS12430 RNA polymerase factor sigma-54 0.41 ABCV34_RS04170 response regulator transcription factor — —

Not shown: 81 genomes with orthologs for GFF776 only; 0 genomes with orthologs for GFF3048 only