Conservation of cofitness between PS417_21010 and PS417_01265 in Pseudomonas simiae WCS417

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21010 ribonuclease activity regulator protein RraA 1.0 PS417_01265 CbbBc protein 0.31 19
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.98 PFLU_RS01360 FdhF/YdeP family oxidoreductase low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.98 PFLU_RS01360 FdhF/YdeP family oxidoreductase 0.48 61
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_00850 ribonuclease activity regulator protein RraA 0.92 AO353_11825 CbbBc protein low > 101
Pseudomonas sp. RS175 0.94 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.91 PFR28_04881 Protein YdeP low > 88
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_02815 ribonuclease activity regulator protein RraA 0.91 AO356_10105 CbbBc protein low > 104
Pseudomonas putida KT2440 0.93 PP_2084 Putative regulator of ribonuclease activity 0.81 PP_0256 putative oxidoreductase low > 96
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.91 Pf6N2E2_3891 Putative formate dehydrogenase oxidoreductase protein low > 103
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.91 PfGW456L13_409 Putative formate dehydrogenase oxidoreductase protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.90 Pf1N1B4_1674 Putative formate dehydrogenase oxidoreductase protein low > 87
Pseudomonas stutzeri RCH2 0.89 Psest_2315 RraA famliy 0.72 Psest_2422 oxidoreductase alpha (molybdopterin) subunit low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2092 Protein of unknown function 1935 0.87 Psyr_4946 Oxidoreductase alpha (molybdopterin) subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2092 Protein of unknown function 1935 0.87 Psyr_4946 Oxidoreductase alpha (molybdopterin) subunit low > 86
Shewanella sp. ANA-3 0.59 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.52 Shewana3_1872 oxidoreductase alpha (molybdopterin) subunit (RefSeq) low > 73
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA 0.53 Xcc-8004.2195.1 Putative formate dehydrogenase oxidoreductase protein low > 74
Escherichia coli ECOR27 0.54 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.46 NOLOHH_18885 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia coli ECRC101 0.54 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.46 MCAODC_16695 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia coli ECRC62 0.54 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.47 BNILDI_17375 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia coli ECRC99 0.54 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.46 KEDOAH_27195 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.46 ECOLIN_RS08610 acid resistance putative oxidoreductase YdeP — —
Escherichia coli ECRC98 0.54 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.46 JDDGAC_03735 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia coli BW25113 0.54 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.46 b1501 YdeP putative oxidoreductase, major subunit, acid resistance protein (Katherine Huang) low > 76
Escherichia coli ECOR38 0.54 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.46 HEPCGN_26555 ydeP acid resistance putative oxidoreductase YdeP low > 85
Escherichia coli ECRC102 0.54 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.46 NIAGMN_25375 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.46 OHPLBJKB_02216 Protein YdeP low > 73
Escherichia coli BL21 0.54 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.46 ECD_01459 putative oxidoreductase low > 60
Escherichia fergusonii Becca 0.54 EFB2_04689 Regulator of ribonuclease activity A 0.46 EFB2_02499 Protein YdeP low > 86
Escherichia coli ECRC101 0.54 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.46 OKFHMN_01245 ydeP acid resistance putative oxidoreductase YdeP — —
Erwinia tracheiphila SCR3 0.54 LU632_RS19685 rraA ribonuclease E activity regulator RraA 0.55 LU632_RS12250 FdhF/YdeP family oxidoreductase low > 74
Pectobacterium carotovorum WPP14 0.54 HER17_RS00840 ribonuclease E activity regulator RraA 0.56 HER17_RS09435 FdhF/YdeP family oxidoreductase low > 75
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4402 regulator of ribonuclease activity A 0.47 EX28DRAFT_0785 oxidoreductase alpha (molybdopterin) subunit low > 76
Serratia liquefaciens MT49 0.54 IAI46_24585 ribonuclease E activity regulator RraA 0.56 IAI46_13855 FdhF/YdeP family oxidoreductase low > 86
Rahnella sp. WP5 0.54 EX31_RS14255 ribonuclease E activity regulator RraA 0.57 EX31_RS07150 FdhF/YdeP family oxidoreductase low > 89
Klebsiella michiganensis M5al 0.54 BWI76_RS00740 ribonuclease E activity regulator RraA 0.49 BWI76_RS13875 CbbBc protein low > 92
Enterobacter sp. TBS_079 0.54 MPMX20_04540 Regulator of ribonuclease activity A 0.47 MPMX20_02683 Protein YdeP low > 85
Alteromonas macleodii MIT1002 0.52 MIT1002_00164 Regulator of ribonuclease activity A 0.70 MIT1002_01713 Formate dehydrogenase H low > 70
Dickeya dadantii 3937 0.52 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.54 DDA3937_RS12475 FdhF/YdeP family oxidoreductase low > 74
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS06240 ribonuclease E activity regulator RraA 0.53 QEN71_RS20715 FdhF/YdeP family oxidoreductase low > 153
Lysobacter sp. OAE881 0.49 ABIE51_RS04140 ribonuclease E activity regulator RraA 0.49 ABIE51_RS14790 FdhF/YdeP family oxidoreductase — —
Pantoea sp. MT58 0.48 IAI47_00840 ribonuclease E activity regulator RraA 0.56 IAI47_09325 FdhF/YdeP family oxidoreductase low > 76
Ralstonia solanacearum PSI07 0.46 RPSI07_RS17355 ribonuclease E inhibitor RraA 0.53 RPSI07_RS04835 formate dehydrogenase low > 81
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS10555 ribonuclease 0.55 HSERO_RS08385 anaerobic (selenocysteine-containing) formate dehydrogenase low > 78
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS00130 ribonuclease 0.52 RALBFv3_RS18760 formate dehydrogenase low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS13460 ribonuclease 0.52 UW163_RS20370 formate dehydrogenase — —
Azospirillum sp. SherDot2 0.46 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.43 MPMX19_04868 Protein YdeP low > 112
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS12315 ribonuclease 0.55 BPHYT_RS13070 oxidoreductase molybdopterin subunit — —
Mycobacterium tuberculosis H37Rv 0.43 Rv3853 Regulator of RNase E activity a RraA 0.44 Rv2900c Possible formate dehydrogenase H FdhF (formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) (formate dehydrogenase-H alpha subunit) (FDH-H) low > 58
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS11580 ribonuclease E activity regulator RraA 0.53 ABZR87_RS19695 FdhF/YdeP family oxidoreductase low > 80
Ralstonia solanacearum GMI1000 0.43 RS_RS06790 ribonuclease E inhibitor RraA 0.52 RS_RS22190 formate dehydrogenase oxidoreduct low > 80
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.54 GFF5640 Putative formate dehydrogenase oxidoreductase protein — —

Not shown: 14 genomes with orthologs for PS417_21010 only; 11 genomes with orthologs for PS417_01265 only