Conservation of cofitness between GFF1977 and GFF1970 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1977 Manganese transport protein MntH 1.0 GFF1970 Uncharacterized PLP-dependent aminotransferase YfdZ 0.57 1
Escherichia fergusonii Becca 0.94 EFB2_01483 Divalent metal cation transporter MntH 0.96 EFB2_01495 Glutamate-pyruvate aminotransferase AlaC low > 86
Escherichia coli ECOR27 0.94 NOLOHH_13995 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 NOLOHH_14055 alaC alanine transaminase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_01330 Divalent metal cation transporter MntH 0.96 OHPLBJKB_01342 Glutamate-pyruvate aminotransferase AlaC low > 73
Escherichia coli Nissle 1917 0.94 ECOLIN_RS13755 Nramp family divalent metal transporter 0.96 ECOLIN_RS13690 alanine transaminase low > 55
Escherichia coli ECOR38 0.94 HEPCGN_21515 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 HEPCGN_21580 alaC alanine transaminase low > 87
Escherichia coli ECRC102 0.94 NIAGMN_20085 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 NIAGMN_20145 alaC alanine transaminase — —
Escherichia coli ECRC100 0.94 OKFHMN_22310 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 OKFHMN_22370 alaC alanine transaminase low > 80
Escherichia coli ECRC62 0.94 BNILDI_12845 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 BNILDI_12910 alaC alanine transaminase low > 75
Escherichia coli ECRC99 0.94 KEDOAH_05910 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 KEDOAH_05850 alaC alanine transaminase — —
Escherichia coli BL21 0.94 ECD_02301 manganese/divalent cation transporter 0.96 ECD_02289 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia coli ECRC98 0.94 JDDGAC_26275 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 JDDGAC_26335 alaC alanine transaminase low > 86
Escherichia coli BW25113 0.94 b2392 mntH manganese transport protein MntH (NCBI) 0.96 b2379 yfdZ hypothetical protein (NCBI) low > 76
Escherichia coli ECRC101 0.94 MCAODC_12840 mntH Mn(2+) uptake NRAMP transporter MntH 0.96 MCAODC_12900 alaC alanine transaminase low > 87
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0232 NRAMP (natural resistance-associated macrophage protein) metal ion transporters 0.93 EX28DRAFT_0240 Aspartate/tyrosine/aromatic aminotransferase low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_03286 Divalent metal cation transporter MntH 0.93 MPMX20_03277 Glutamate-pyruvate aminotransferase AlaC low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS20535 manganese transporter MntH 0.96 BWI76_RS20495 alanine transaminase — —
Dickeya dadantii 3937 0.81 DDA3937_RS04340 Nramp family divalent metal transporter 0.89 DDA3937_RS14825 alanine transaminase low > 74
Dickeya dianthicola ME23 0.81 DZA65_RS04255 divalent metal cation transporter 0.89 DZA65_RS15705 alanine transaminase low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS04335 Nramp family divalent metal transporter 0.89 HGI48_RS14755 alanine transaminase low > 71
Pectobacterium carotovorum WPP14 0.80 HER17_RS17405 Nramp family divalent metal transporter 0.90 HER17_RS06655 alanine transaminase low > 75
Pantoea sp. MT58 0.79 IAI47_05535 Nramp family divalent metal transporter 0.90 IAI47_05575 alanine transaminase low > 76
Serratia liquefaciens MT49 0.79 IAI46_18255 Nramp family divalent metal transporter 0.89 IAI46_18180 alanine transaminase low > 86
Rahnella sp. WP5 0.79 EX31_RS20075 Mn(2+) uptake NRAMP transporter MntH 0.87 EX31_RS20015 alanine transaminase low > 89
Mycobacterium tuberculosis H37Rv 0.42 Rv0924c Divalent cation-transport integral membrane protein MntH (BRAMP) (MRAMP) 0.17 Rv1178 Probable aminotransferase low > 58
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS21390 Nramp family divalent metal transporter 0.17 ABZR87_RS11770 succinyldiaminopimelate transaminase low > 80
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS10500 manganese transporter 0.80 HSERO_RS12800 aspartate aminotransferase low > 78
Azospirillum sp. SherDot2 0.38 MPMX19_03690 Divalent metal cation transporter MntH 0.55 MPMX19_00804 Glutamate-pyruvate aminotransferase AlaC — —
Agrobacterium fabrum C58 0.37 Atu1736 manganese transport protein 0.49 Atu1589 aminotransferase, class I low > 89
Ralstonia solanacearum UW163 0.36 UW163_RS22295 divalent metal cation transporter 0.16 UW163_RS13650 succinyldiaminopimelate transaminase — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS21155 divalent metal cation transporter 0.16 RALBFv3_RS00320 succinyldiaminopimelate transaminase low > 76
Rhodopseudomonas palustris CGA009 0.36 TX73_014020 Nramp family divalent metal transporter 0.47 TX73_012935 LL-diaminopimelate aminotransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_2305 Natural resistance-associated macrophage protein 0.86 Psyr_0468 Aminotransferase, class I and II low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_2305 Natural resistance-associated macrophage protein 0.86 Psyr_0468 Aminotransferase, class I and II low > 86
Pseudomonas simiae WCS417 0.36 PS417_11460 divalent metal cation transporter MntH 0.87 PS417_21975 glutamate-pyruvate aminotransferase low > 88
Ralstonia solanacearum GMI1000 0.36 RS_RS19660 divalent metal cation transporter 0.17 RS_RS05445 pyridoxal phosphate-dependent aminotransferase low > 80
Variovorax sp. SCN45 0.36 GFF7172 Manganese transport protein MntH 0.15 GFF254 N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2 low > 127
Ralstonia solanacearum PSI07 0.36 RPSI07_RS01990 divalent metal cation transporter 0.16 RPSI07_RS17155 succinyldiaminopimelate transaminase low > 81
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS12040 divalent metal cation transporter 0.87 PFLU_RS23580 alanine transaminase low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS12040 divalent metal cation transporter 0.87 PFLU_RS23580 alanine transaminase low > 109
Rhizobium sp. OAE497 0.35 ABIE40_RS05385 Nramp family divalent metal transporter 0.51 ABIE40_RS08645 LL-diaminopimelate aminotransferase low > 107
Bifidobacterium breve UCC2003 0.35 BBR_RS12535 divalent metal cation transporter MntH 0.27 BBR_RS13460 aminotransferase low > 34
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS20115 Nramp family divalent metal transporter 0.17 QEN71_RS03275 pyridoxal phosphate-dependent aminotransferase low > 153
Paraburkholderia graminis OAS925 0.32 ABIE53_002372 manganese transport protein 0.19 ABIE53_005883 arginine:pyruvate transaminase low > 113
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS16785 manganese transporter 0.81 RR42_RS28540 glutamate--pyruvate aminotransferase low > 128
Bacteroides thetaiotaomicron VPI-5482 0.24 BT0629 Mn2+ and Fe2+ transport protein (NCBI ptt file) 0.26 BT3935 aminotransferase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS16610 Nramp family divalent metal transporter 0.29 HMPREF1181_RS06565 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 56
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS14005 Nramp family divalent metal transporter 0.29 ABI39_RS10505 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 72
Bacteroides ovatus ATCC 8483 0.24 BACOVA_02251 metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 0.27 BACOVA_01161 aminotransferase, class I/II low > 94
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS17790 Nramp family divalent metal transporter 0.29 HMPREF1058_RS14790 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 67
Desulfovibrio vulgaris Miyazaki F 0.23 DvMF_0379 natural resistance-associated macrophage protein (RefSeq) 0.55 DvMF_1411 aminotransferase class I and II (RefSeq) low > 51
Parabacteroides merdae CL09T00C40 0.23 HMPREF1078_RS08610 Nramp family divalent metal transporter 0.29 HMPREF1078_RS01130 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_3011 Mn2+ and Fe2+ transporters of the NRAMP family 0.26 Echvi_0124 Aspartate/tyrosine/aromatic aminotransferase low > 79
Sinorhizobium meliloti 1021 0.11 SMa1115 Mn2+/Fe2+ transporter NRAMP family 0.51 SMc00294 aminotransferase low > 103
Variovorax sp. OAS795 0.10 ABID97_RS22130 divalent metal cation transporter 0.16 ABID97_RS16630 succinyldiaminopimelate transaminase low > 91

Not shown: 9 genomes with orthologs for GFF1977 only; 26 genomes with orthologs for GFF1970 only