| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_0309 | | RND family efflux transporter, MFP subunit | 1.0 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.31 | 13 |
| Pseudomonas sp. S08-1 | 0.72 | OH686_16045 | | Multidrug efflux system, membrane fusion component | 0.70 | OH686_03105 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.66 | Pf6N2E2_2823 | | Multidrug efflux RND membrane fusion protein MexC | 0.73 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.32 | 37 |
| Pseudomonas fluorescens FW300-N2C3 | 0.66 | AO356_04875 | | antibiotic transporter | 0.72 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | low | > 104 |
| Pseudomonas sp. RS175 | 0.66 | PFR28_00632 | | putative efflux pump periplasmic linker TtgA | 0.72 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.70 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.70 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.64 | PS417_06775 | | antibiotic transporter | 0.71 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_4007 | | Secretion protein HlyD | 0.72 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_4007 | | Secretion protein HlyD | 0.72 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.64 | Pf1N1B4_3247 | | Multidrug efflux RND membrane fusion protein MexC | 0.66 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas putida KT2440 | 0.63 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | 0.71 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.63 | PfGW456L13_4580 | | Multidrug efflux RND membrane fusion protein MexC | 0.68 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.61 | AO353_17300 | | antibiotic transporter | 0.70 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | 0.37 | 57 |
| Escherichia coli ECRC101 | 0.50 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | MCAODC_08560 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli BL21 | 0.50 | ECD_00414 | | multidrug efflux system | 0.11 | ECD_03047 | | D-alanyl-D-alanine carboxypeptidase | low | > 60 |
| Escherichia coli ECOR27 | 0.50 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | NOLOHH_09840 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 57 |
| Escherichia coli BW25113 | 0.50 | b0463 | acrA | multidrug efflux system (NCBI) | 0.11 | b3182 | dacB | D-alanyl-D-alanine carboxypeptidase (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.50 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | JDDGAC_21665 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC102 | 0.50 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | NIAGMN_15800 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC62 | 0.50 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | BNILDI_01695 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC99 | 0.50 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | KEDOAH_10110 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.50 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | 0.11 | OHPLBJKB_00518 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 73 |
| Escherichia coli ECRC101 | 0.50 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | OKFHMN_18040 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli Nissle 1917 | 0.49 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | ECOLIN_RS18325 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECOR38 | 0.49 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.11 | HEPCGN_16915 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 85 |
| Escherichia fergusonii Becca | 0.49 | EFB2_03595 | | Multidrug efflux pump subunit AcrA | 0.11 | EFB2_00641 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 86 |
| Enterobacter sp. TBS_079 | 0.49 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | 0.11 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 85 |
| Serratia liquefaciens MT49 | 0.49 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | 0.11 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 86 |
| Enterobacter asburiae PDN3 | 0.49 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | 0.11 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | low | > 76 |
| Pantoea sp. MT58 | 0.47 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.12 | IAI47_17085 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | 0.13 | HER17_RS18335 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.60 | 67 |
| Paraburkholderia sabiae LMG 24235 | 0.47 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | QEN71_RS02470 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 153 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | 0.11 | ABZR86_RS00485 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 74 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS19385 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | UW163_RS01390 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS19790 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | RALBFv3_RS12220 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS23060 | | hemolysin D | 0.34 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.45 | RS_RS21035 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | RS_RS02925 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 80 |
| Variovorax sp. SCN45 | 0.45 | GFF3822 | | RND efflux system, membrane fusion protein | 0.31 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 127 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS03395 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | RPSI07_RS21110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS32415 | | hemolysin D | 0.31 | RR42_RS03245 | | D-alanyl-D-alanine carboxypeptidase | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.42 | H281DRAFT_04171 | | membrane fusion protein, multidrug efflux system | 0.31 | H281DRAFT_04181 | | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | low | > 103 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.42 | GFF5686 | | RND efflux system, membrane fusion protein CmeA | 0.25 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 90 |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | ABZR87_RS08110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 80 |
| Variovorax sp. OAS795 | 0.37 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | 0.31 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.30 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | 0.26 | ABCV34_RS15375 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 48 |
| Dechlorosoma suillum PS | 0.31 | Dsui_3181 | | RND family efflux transporter, MFP subunit | 0.30 | Dsui_0294 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | low | > 51 |
| Parabacteroides merdae CL09T00C40 | 0.21 | HMPREF1078_RS00005 | | efflux RND transporter periplasmic adaptor subunit | 0.14 | HMPREF1078_RS17360 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 61 |
Not shown: 35 genomes with orthologs for Psest_0309 only; 8 genomes with orthologs for Psest_1950 only