Conservation of cofitness between Psest_1648 and Psest_1649 in Pseudomonas stutzeri RCH2

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1648 ATP-dependent DNA ligase 1.0 Psest_1649 Predicted exonuclease of the beta-lactamase fold involved in RNA processing 0.23 17
Pseudomonas sp. S08-1 0.77 OH686_06060 DNA ligase, ATP-dependent, family 0.82 OH686_06055 putative exonuclease, DNA ligase-associated low > 80
Pseudomonas sp. RS175 0.75 PFR28_00508 DNA ligase 0.76 PFR28_00509 hypothetical protein 0.24 88
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_3873 ATP-dependent DNA ligase:ATP-dependent DNA ligase 0.84 Psyr_3872 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_3873 ATP-dependent DNA ligase:ATP-dependent DNA ligase 0.84 Psyr_3872 conserved hypothetical protein low > 86
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_05490 ATP-dependent DNA ligase 0.77 AO356_05485 DNA ligase-associated DEXH box helicase 0.27 41
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_2957 ATP-dependent DNA ligase (EC 6.5.1.1) LigC 0.73 Pf6N2E2_2956 mRNA 3-end processing factor low > 103
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_3180 ATP-dependent DNA ligase (EC 6.5.1.1) LigC 0.77 Pf1N1B4_3181 mRNA 3-end processing factor low > 87
Pseudomonas simiae WCS417 0.71 PS417_06420 ATP-dependent DNA ligase 0.77 PS417_06425 exonuclease low > 88
Pseudomonas fluorescens SBW25 0.71 PFLU_RS06485 ATP-dependent DNA ligase 0.78 PFLU_RS06490 ligase-associated DNA damage response exonuclease low > 109
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS06485 ATP-dependent DNA ligase 0.78 PFLU_RS06490 ligase-associated DNA damage response exonuclease low > 109
Pseudomonas putida KT2440 0.71 PP_1105 putative DNA ligase, ATP-dependent 0.77 PP_1106 conserved protein of unknown function low > 96
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS21355 ATP-dependent DNA ligase 0.70 ABZR87_RS21350 ligase-associated DNA damage response exonuclease low > 80
Variovorax sp. OAS795 0.64 ABID97_RS00390 ATP-dependent DNA ligase 0.74 ABID97_RS00395 ligase-associated DNA damage response exonuclease low > 91
Variovorax sp. SCN45 0.61 GFF3697 ATP-dependent DNA ligase (EC 6.5.1.1) LigC 0.75 GFF3696 mRNA 3-end processing factor low > 127
Acidovorax sp. GW101-3H11 0.56 Ac3H11_4922 ATP-dependent DNA ligase (EC 6.5.1.1) LigC 0.57 Ac3H11_4921 mRNA 3-end processing factor 0.39 14
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_02819 DNA ligase-1 0.61 H281DRAFT_02820 putative mRNA 3-end processing factor low > 103
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS20340 ATP-dependent DNA ligase 0.62 QEN71_RS20345 ligase-associated DNA damage response exonuclease low > 153
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS11395 ATP-dependent DNA ligase 0.66 HSERO_RS11400 exonuclease low > 78
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS26300 ATP-dependent DNA ligase 0.62 BPHYT_RS26305 exonuclease low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1241 ATP-dependent DNA ligase (EC 6.5.1.1) LigC 0.66 GFF1242 mRNA 3-end processing factor low > 90
Mucilaginibacter yixingensis YX-36 DSM 26809 0.45 ABZR88_RS21575 ATP-dependent DNA ligase 0.53 ABZR88_RS20350 ligase-associated DNA damage response exonuclease low > 71
Dinoroseobacter shibae DFL-12 0.41 Dshi_2589 ATP dependent DNA ligase (RefSeq) 0.46 Dshi_2587 DNA damage response exonuclease, associated with a ligase (from data) 0.86 6
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.3656.1 ATP-dependent DNA ligase (EC 6.5.1.1) LigC 0.45 Xcc-8004.3654.1 hypothetical protein low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS09095 ATP-dependent DNA ligase 0.48 CA265_RS09100 DNA ligase-associated DEXH box helicase 0.58 13
Lysobacter sp. OAE881 0.39 ABIE51_RS03755 ATP-dependent DNA ligase 0.46 ABIE51_RS03750 ligase-associated DNA damage response exonuclease low > 62
Rhizobium sp. OAE497 0.28 ABIE40_RS04635 cisplatin damage response ATP-dependent DNA ligase 0.36 ABIE40_RS04630 ligase-associated DNA damage response exonuclease low > 107
Agrobacterium fabrum C58 0.28 Atu0840 ATP-dependent DNA ligase 0.36 Atu0839 hypothetical protein 0.22 5
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_3851 DNA ligase, ATP-dependent, PP_1105 family 0.32 Ga0059261_3852 putative exonuclease, DNA ligase-associated 0.28 61
Phaeobacter inhibens DSM 17395 0.27 PGA1_262p00500 putative ATP dependent DNA ligase 0.32 PGA1_262p00510 Predicted exonuclease of the beta-lactamase fold involved in RNA processing low > 62
Rhodopseudomonas palustris CGA009 0.27 TX73_004135 ATP-dependent DNA ligase 0.35 TX73_004140 ligase-associated DNA damage response exonuclease low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS04120 cisplatin damage response ATP-dependent DNA ligase 0.39 A4249_RS08710 ligase-associated DNA damage response exonuclease low > 48
Caulobacter crescentus NA1000 0.26 CCNA_03725 ATP-dependent DNA ligase 0.36 CCNA_03759 mRNA 3'-end processing factor 0.74 2
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_03725 ATP-dependent DNA ligase 0.36 CCNA_03759 mRNA 3'-end processing factor low > 67
Azospirillum brasilense Sp245 0.26 AZOBR_RS09960 ATP-dependent DNA ligase 0.36 AZOBR_RS09955 beta-lactamase low > 97
Azospirillum sp. SherDot2 0.25 MPMX19_02215 DNA ligase 0.36 MPMX19_02216 hypothetical protein low > 112
Bosea sp. OAE506 0.24 ABIE41_RS24090 cisplatin damage response ATP-dependent DNA ligase 0.32 ABIE41_RS24100 ligase-associated DNA damage response exonuclease low > 77
Sinorhizobium meliloti 1021 0.24 SMc03177 ATP-dependent DNA ligase 0.34 SMc03176 hypothetical protein low > 103
Alteromonas macleodii MIT1002 0.24 MIT1002_03768 Putative DNA ligase-like protein/MT0965 0.32 MIT1002_03767 Ribonuclease low > 70

Not shown: 1 genomes with orthologs for Psest_1648 only; 1 genomes with orthologs for Psest_1649 only