Conservation of cofitness between ECD_00354 and ECD_03289 in Escherichia coli BL21

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00354 tRNA-guanine transglycosylase 1.0 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor 0.57 45
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 1.00 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 73
Escherichia coli ECRC101 1.00 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.99 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC62 1.00 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.99 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 1.00 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC100 1.00 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.99 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECOR27 1.00 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.99 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli ECRC99 1.00 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.99 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli BW25113 1.00 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 1.00 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia fergusonii Becca 1.00 EFB2_03651 Queuine tRNA-ribosyltransferase 1.00 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli ECRC98 1.00 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.99 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 86
Escherichia coli ECRC102 1.00 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.99 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECOR38 1.00 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.98 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.94 GFF570 Gluconate utilization system Gnt-I transcriptional repressor low > 78
Enterobacter sp. TBS_079 0.98 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.97 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Enterobacter asburiae PDN3 0.98 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.97 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Klebsiella michiganensis M5al 0.98 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.95 BWI76_RS26245 transcriptional regulator — —
Pantoea sp. MT58 0.95 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.76 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Dickeya dadantii 3937 0.92 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.74 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Dickeya dianthicola ME23 0.92 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.75 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Pectobacterium carotovorum WPP14 0.92 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.75 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.75 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Rahnella sp. WP5 0.91 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.81 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Serratia liquefaciens MT49 0.91 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.83 IAI46_23965 gluconate operon transcriptional repressor GntR low > 86
Erwinia tracheiphila SCR3 0.91 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.72 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR low > 74
Vibrio cholerae E7946 ATCC 55056 0.85 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.51 CSW01_01485 transcriptional regulator low > 62
Alteromonas macleodii MIT1002 0.76 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.33 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor low > 70
Pseudomonas stutzeri RCH2 0.72 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.30 Psest_2126 Transcriptional regulators low > 67
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.30 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_15790 queuine tRNA-ribosyltransferase 0.31 AO353_03255 LacI family transcriptional regulator — —
Pseudomonas sp. RS175 0.72 PFR28_00277 Queuine tRNA-ribosyltransferase 0.29 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.30 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1228 tRNA-guanine transglycosylase 0.30 Psyr_3336 transcriptional regulator, LacI family — —
Pseudomonas putida KT2440 0.72 PP_0833 queuine tRNA-ribosyltransferase 0.25 PP_3415 Transcriptional regulator, LacI family low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1228 tRNA-guanine transglycosylase 0.30 Psyr_3336 transcriptional regulator, LacI family — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.29 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_06690 queuine tRNA-ribosyltransferase 0.29 AO356_05065 LacI family transcriptional regulator low > 104
Pseudomonas simiae WCS417 0.71 PS417_23245 queuine tRNA-ribosyltransferase 0.29 PS417_21990 LacI family transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.29 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.29 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Castellaniella sp019104865 MT123 0.65 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.25 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator low > 48
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.32 HSERO_RS05460 LacI family transcription regulator low > 78
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.26 QEN71_RS13585 LacI family DNA-binding transcriptional regulator low > 153
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04670 tRNA-guanine transglycosylase 0.26 H281DRAFT_05920 transcriptional regulator, LacI family low > 103
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.31 BPHYT_RS00410 LacI family transcription regulator low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.27 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor low > 90
Acidovorax sp. GW101-3H11 0.57 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.28 Ac3H11_335 Transcriptional regulator, LacI family low > 79
Variovorax sp. SCN45 0.57 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.28 GFF5780 Positive regulator of L-idonate catabolism low > 127
Variovorax sp. OAS795 0.57 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.27 ABID97_RS01205 LacI family DNA-binding transcriptional regulator low > 91
Azospirillum brasilense Sp245 0.52 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.31 AZOBR_RS15720 LacI family transcription regulator — —
Azospirillum sp. SherDot2 0.52 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.28 MPMX19_04850 HTH-type transcriptional regulator GntR low > 112
Phaeobacter inhibens DSM 17395 0.51 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.26 PGA1_c33870 putative HTH-type transcriptional regulator GntR low > 62
Dinoroseobacter shibae DFL-12 0.50 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.30 Dshi_4217 transcriptional regulator, LacI family (RefSeq) low > 64
Rhizobium sp. OAE497 0.49 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.26 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator low > 107
Agrobacterium fabrum C58 0.48 Atu1677 queuine tRNA-ribosyltransferase 0.23 Atu4685 LacI family transcriptional regulator low > 89

Not shown: 45 genomes with orthologs for ECD_00354 only; 1 genomes with orthologs for ECD_03289 only