Conservation of cofitness between ECD_02630 and ECD_03261 in Escherichia coli BL21

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 1.0 ECD_03261 ferrous iron transporter protein B and GTP-binding protein; membrane protein 0.48 39
Escherichia coli BW25113 1.00 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 1.00 b3409 feoB ferrous iron transport protein B (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OHPLBJKB_00294 Fe(2+) transporter FeoB low > 73
Escherichia coli ECRC62 0.99 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 BNILDI_02715 feoB Fe(2+) transporter permease subunit FeoB low > 75
Escherichia coli ECOR27 0.99 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NOLOHH_08805 feoB Fe(2+) transporter permease subunit FeoB low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 ECOLIN_RS19475 Fe(2+) transporter permease subunit FeoB low > 55
Escherichia coli ECRC100 0.99 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OKFHMN_17015 feoB Fe(2+) transporter permease subunit FeoB low > 80
Escherichia coli ECRC99 0.99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 KEDOAH_11125 feoB Fe(2+) transporter permease subunit FeoB — —
Escherichia coli ECRC101 0.99 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 MCAODC_07545 feoB Fe(2+) transporter permease subunit FeoB low > 87
Escherichia coli ECRC98 0.99 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 JDDGAC_20645 feoB Fe(2+) transporter permease subunit FeoB low > 86
Escherichia coli ECRC102 0.99 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NIAGMN_14785 feoB Fe(2+) transporter permease subunit FeoB — —
Escherichia coli ECOR38 0.98 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 HEPCGN_15825 feoB ferrous iron transport protein B low > 87
Escherichia fergusonii Becca 0.98 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 EFB2_00419 Fe(2+) transporter FeoB low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.91 GFF609 Ferrous iron transport protein B low > 78
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.87 EX28DRAFT_4133 ferrous iron transporter FeoB low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 MPMX20_04296 Fe(2+) transporter FeoB low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.87 BWI76_RS26645 ferrous iron transporter B low > 92
Dickeya dianthicola ME23 0.66 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 DZA65_RS11905 Fe(2+) transporter permease subunit FeoB low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 HGI48_RS11570 Fe(2+) transporter permease subunit FeoB low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.42 DDA3937_RS11525 Fe(2+) transporter permease subunit FeoB low > 74
Pantoea sp. MT58 0.64 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.60 IAI47_21535 Fe(2+) transporter permease subunit FeoB low > 76
Serratia liquefaciens MT49 0.63 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 IAI46_23810 Fe(2+) transporter permease subunit FeoB low > 86
Rahnella sp. WP5 0.62 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 EX31_RS04850 Fe(2+) transporter permease subunit FeoB low > 89
Erwinia tracheiphila SCR3 0.59 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 LU632_RS22965 feoB Fe(2+) transporter permease subunit FeoB low > 74
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 CSW01_10385 Fe(2+) transporter permease subunit FeoB low > 62
Shewanella amazonensis SB2B 0.45 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.33 Sama_1215 ferrous iron transport protein B (RefSeq) — —
Shewanella loihica PV-4 0.44 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.35 Shew_2517 ferrous iron transport protein B (RefSeq) — —
Shewanella sp. ANA-3 0.43 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.34 Shewana3_2670 ferrous iron transport protein B (RefSeq) — —
Shewanella oneidensis MR-1 0.43 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.34 SO1784 feoB ferrous iron transport protein B (NCBI ptt file) low > 76
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.16 Xcc-8004.2920.1 Ferrous iron transport protein B low > 74
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.18 ABZR86_RS20600 ferrous iron transporter B low > 74
Acinetobacter radioresistens SK82 0.34 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.19 MPMX26_00171 Fe(2+) transporter FeoB — —
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS13170 23S rRNA methyltransferase 0.20 RR42_RS21220 iron transporter FeoB low > 128
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.21 CA264_15345 ferrous iron transporter B — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.19 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.20 ABZR88_RS00325 ferrous iron transport protein B — —
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 HMPREF1078_RS00055 ferrous iron transport protein B low > 61
Phocaeicola vulgatus CL09T03C04 0.19 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 HMPREF1058_RS18205 ferrous iron transport protein B low > 67
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 ABI39_RS14480 ferrous iron transport protein B low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.23 DVU2571 feoB ferrous iron transport protein B (TIGR) — —
Bacteroides ovatus ATCC 8483 0.18 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA 0.24 BACOVA_04334 ferrous iron transport protein B — —
Magnetospirillum magneticum AMB-1 0.17 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.38 AMB_RS13735 Fe(2+) transporter permease subunit FeoB low > 64
Bacteroides thetaiotaomicron VPI-5482 0.17 BT0643 RNA methyltransferase (NCBI ptt file) 0.23 BT1592 putative ferrous iron transport protein (NCBI ptt file) — —
Fusobacterium nucleatum SB010 0.17 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.26 HUW76_07030 ferrous iron transport protein B low > 35
Azospirillum brasilense Sp245 0.16 AZOBR_RS01195 RNA methyltransferase 0.12 AZOBR_RS17645 iron transporter FeoB low > 97
Caulobacter crescentus NA1000 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.20 CCNA_00749 ferrous iron transport protein B — —
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.20 CCNA_00749 ferrous iron transport protein B low > 67
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.18 TX73_024070 ferrous iron transporter B — —
Brevundimonas sp. GW460-12-10-14-LB2 0.13 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.19 A4249_RS07765 ferrous iron transporter B low > 48
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.40 Rru_A2470 Ferrous iron transport protein B (NCBI) — —

Not shown: 48 genomes with orthologs for ECD_02630 only; 1 genomes with orthologs for ECD_03261 only