Conservation of cofitness between ECD_02630 and ECD_02906 in Escherichia coli BL21

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 1.0 ECD_02906 ADP-ribose pyrophosphatase 0.50 26
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OHPLBJKB_00669 ADP-ribose pyrophosphatase low > 73
Escherichia coli BW25113 1.00 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 1.00 b3034 nudF ADP-ribose pyrophosphatase (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 BNILDI_00900 nudF ADP-ribose diphosphatase low > 75
Escherichia coli ECOR27 0.99 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NOLOHH_10615 nudF ADP-ribose diphosphatase low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 ECOLIN_RS17510 ADP-ribose diphosphatase low > 55
Escherichia coli ECRC100 0.99 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OKFHMN_18810 nudF ADP-ribose diphosphatase low > 80
Escherichia coli ECRC101 0.99 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 MCAODC_09325 nudF ADP-ribose diphosphatase low > 87
Escherichia coli ECRC98 0.99 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 JDDGAC_22445 nudF ADP-ribose diphosphatase low > 86
Escherichia coli ECRC99 0.99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 KEDOAH_09335 nudF ADP-ribose diphosphatase — —
Escherichia coli ECRC102 0.99 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NIAGMN_16575 nudF ADP-ribose diphosphatase — —
Escherichia fergusonii Becca 0.98 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 EFB2_00774 ADP-ribose pyrophosphatase low > 86
Escherichia coli ECOR38 0.98 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 HEPCGN_17685 nudF ADP-ribose diphosphatase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.89 GFF3148 ADP-ribose pyrophosphatase (EC 3.6.1.13) 0.66 1
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.91 EX28DRAFT_3072 nudix-type nucleoside diphosphatase, YffH/AdpP family low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.91 MPMX20_03881 ADP-ribose pyrophosphatase low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.86 BWI76_RS24395 ADP-ribose diphosphatase low > 92
Dickeya dianthicola ME23 0.66 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 DZA65_RS01715 ADP-ribose diphosphatase low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 HGI48_RS01640 ADP-ribose diphosphatase low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 DDA3937_RS01745 ADP-ribose diphosphatase low > 74
Pectobacterium carotovorum WPP14 0.64 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.72 HER17_RS19820 ADP-ribose diphosphatase low > 75
Pantoea sp. MT58 0.64 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 IAI47_03140 ADP-ribose diphosphatase low > 76
Serratia liquefaciens MT49 0.63 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 IAI46_21940 ADP-ribose diphosphatase low > 86
Rahnella sp. WP5 0.62 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 EX31_RS08095 ADP-ribose diphosphatase low > 89
Erwinia tracheiphila SCR3 0.59 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 LU632_RS20630 nudF ADP-ribose diphosphatase low > 74
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 CSW01_12330 ADP-ribose diphosphatase low > 62
Shewanella amazonensis SB2B 0.45 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.58 Sama_3047 ADP-ribose diphosphatase (RefSeq) low > 62
Shewanella loihica PV-4 0.44 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.56 Shew_0545 ADP-ribose diphosphatase (RefSeq) low > 60
Shewanella sp. ANA-3 0.43 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.54 Shewana3_0726 nucleoside diphosphate pyrophosphatase (RefSeq) 0.76 45
Shewanella oneidensis MR-1 0.43 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.53 SO3903 MutT/nudix family protein (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.42 B158DRAFT_0975 nudix-type nucleoside diphosphatase, YffH/AdpP family low > 40
Marinobacter adhaerens HP15 0.36 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.44 HP15_454 nucleoside diphosphate pyrophosphatase low > 73
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.48 Psest_0479 nudix-type nucleoside diphosphatase, YffH/AdpP family low > 67
Acinetobacter radioresistens SK82 0.34 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.31 MPMX26_00179 ADP-ribose pyrophosphatase low > 36
Pseudomonas simiae WCS417 0.34 PS417_20155 23S rRNA methyltransferase 0.45 PS417_02370 ADP-ribose pyrophosphatase low > 88
Pseudomonas sp. S08-1 0.33 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.46 OH686_15835 ADP-ribose pyrophosphatase low > 80
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.46 PFLU_RS02445 NUDIX domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.46 PFLU_RS02445 NUDIX domain-containing protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.42 Psyr_0547 Conserved hypothetical protein 52 low > 86
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.42 Psyr_0547 Conserved hypothetical protein 52 low > 86
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.44 Pf1N1B4_1444 ADP-ribose pyrophosphatase (EC 3.6.1.13) low > 87
Pseudomonas sp. RS175 0.32 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.46 PFR28_05094 ADP-ribose pyrophosphatase low > 88
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_19055 23S rRNA methyltransferase 0.47 AO356_08795 ADP-ribose pyrophosphatase low > 104
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.46 Pf6N2E2_3641 ADP-ribose pyrophosphatase (EC 3.6.1.13) low > 103
Alteromonas macleodii MIT1002 0.31 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 MIT1002_00671 ADP-ribose pyrophosphatase low > 70
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_02715 23S rRNA methyltransferase 0.45 AO353_13025 ADP-ribose pyrophosphatase low > 101
Pseudomonas putida KT2440 0.30 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.44 PP_4919 ADP-ribose/sugar pyrophosphatase low > 96
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.44 PfGW456L13_182 ADP-ribose pyrophosphatase (EC 3.6.1.13) low > 87
Magnetospirillum magneticum AMB-1 0.17 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.44 AMB_RS06645 NUDIX domain-containing protein low > 64
Azospirillum brasilense Sp245 0.16 AZOBR_RS01195 RNA methyltransferase 0.37 AZOBR_RS08710 ADP-ribose pyrophosphatase low > 97
Azospirillum sp. SherDot2 0.16 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 MPMX19_01327 ADP-ribose pyrophosphatase low > 112
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.24 TX73_019105 NUDIX hydrolase low > 86
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.37 Rru_A1525 Nucleoside diphosphate pyrophosphatase (NCBI) — —

Not shown: 44 genomes with orthologs for ECD_02630 only; 0 genomes with orthologs for ECD_02906 only