Conservation of cofitness between ECD_00741 and ECD_02843 in Escherichia coli BL21

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00741 7,8-diaminopelargonic acid synthase, PLP-dependent 1.0 ECD_02843 glycolate transporter 0.55 6
Escherichia coli ECRC62 0.99 BNILDI_21045 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 BNILDI_00565 glcA glycolate permease GlcA — —
Escherichia coli ECOR27 0.99 NOLOHH_22775 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 NOLOHH_10950 glcA glycolate permease GlcA low > 57
Escherichia coli BW25113 0.99 b0774 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) 1.00 b2975 yghK glycolate transporter (NCBI) low > 76
Escherichia coli ECOR38 0.99 HEPCGN_01635 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 HEPCGN_18025 glcA glycolate permease GlcA low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02939 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1.00 OHPLBJKB_00732 Glycolate permease GlcA low > 73
Escherichia fergusonii Becca 0.99 EFB2_03331 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1.00 EFB2_00840 Glycolate permease GlcA low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS04125 adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 ECOLIN_RS17115 glycolate permease GlcA low > 52
Dickeya dadantii 3937 0.76 DDA3937_RS08505 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.23 DDA3937_RS12250 L-lactate permease low > 74
Dickeya dianthicola 67-19 0.75 HGI48_RS08670 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.24 HGI48_RS12340 L-lactate permease low > 71
Dickeya dianthicola ME23 0.75 DZA65_RS08960 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.24 DZA65_RS12780 L-lactate permease low > 75
Phocaeicola vulgatus CL09T03C04 0.59 HMPREF1058_RS17955 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.21 HMPREF1058_RS17640 L-lactate permease low > 67
Phocaeicola dorei CL03T12C01 0.59 ABI39_RS14245 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.13 ABI39_RS13830 L-lactate permease low > 72
Shewanella loihica PV-4 0.56 Shew_1718 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.15 Shew_3135 L-lactate permease (RefSeq) — —
Shewanella sp. ANA-3 0.56 Shewana3_2520 aminotransferase (RefSeq) 0.15 Shewana3_2904 propionate/L-lactate/D-lactate transporter (from data) — —
Shewanella oneidensis MR-1 0.56 SO2741 bioA adenosylmethionine--8-amino-7-oxononanoate aminotransferase (NCBI ptt file) 0.67 SO0827 lldP propionate/L-lactate/D-lactate transporter (from data) — —
Shewanella amazonensis SB2B 0.51 Sama_1437 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.15 Sama_2439 L-lactate permease, putative (RefSeq) — —
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_1002 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.48 DvMF_2129 L-lactate transport (RefSeq) low > 51
Pseudomonas sp. S08-1 0.35 OH686_10850 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.76 OH686_17015 L-lactate permease low > 80
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_08045 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.75 AO353_05700 L-lactate permease low > 101
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_13570 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.75 AO356_07550 L-lactate and D-lactate permease (lctP family) (from data) low > 104
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1044 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.74 PfGW456L13_5114 L-lactate permease low > 87
Pseudomonas putida KT2440 0.34 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.78 PP_4735 L-lactate permease low > 96
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2377 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.74 Pf1N1B4_1186 L-lactate permease low > 87
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_4631 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.75 Pf6N2E2_3380 L-lactate permease low > 103
Pseudomonas sp. RS175 0.34 PFR28_04208 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.76 PFR28_00063 Glycolate permease GlcA low > 88
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.77 PFLU_RS25945 L-lactate permease low > 109
Pseudomonas fluorescens SBW25 0.34 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.77 PFLU_RS25945 L-lactate permease low > 109
Azospirillum brasilense Sp245 0.33 AZOBR_RS31120 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.69 AZOBR_RS25125 L-lactate permease low > 97
Pseudomonas simiae WCS417 0.33 PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.77 PS417_24105 D-lactate transporter (lctP family) (from data) low > 88
Rhodopseudomonas palustris CGA009 0.32 TX73_015405 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.42 TX73_005835 L-lactate permease low > 86
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU2559 bioA adenosylmethionine--8-amino-7-oxononanoate aminotransferase (TIGR) 0.48 DVU3284 b2975 L-lactate permease (TIGR) low > 55
Paraburkholderia graminis OAS925 0.30 ABIE53_000580 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.33 ABIE53_002860 lactate permease low > 113
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS12335 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.43 ABZR87_RS09780 L-lactate permease low > 80
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_02094 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.32 H281DRAFT_00392 lactate permease low > 103
Ralstonia solanacearum PSI07 0.30 RPSI07_RS16705 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.42 RPSI07_RS19390 L-lactate permease low > 81
Ralstonia solanacearum UW163 0.29 UW163_RS14150 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.42 UW163_RS15740 L-lactate permease — —
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS00815 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.42 RALBFv3_RS14070 L-lactate permease low > 76
Ralstonia solanacearum GMI1000 0.29 RS_RS07430 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.41 RS_RS04855 L-lactate permease 0.27 55
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS01100 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.67 QEN71_RS10155 lactate permease LctP family transporter — —
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS00925 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA 0.65 RR42_RS21280 L-lactate permease low > 128

Not shown: 56 genomes with orthologs for ECD_00741 only; 3 genomes with orthologs for ECD_02843 only