Conservation of cofitness between ECD_02776 and ECD_02741 in Escherichia coli BL21

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 1.0 ECD_02741 UPF0149 family protein 0.79 3
Escherichia coli ECOR38 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 1.00 HEPCGN_18790 ygfB UPF0149 family protein YgfB low > 87
Escherichia coli ECRC101 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 MCAODC_10020 ygfB UPF0149 family protein YgfB low > 87
Escherichia coli ECRC100 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 OKFHMN_19500 ygfB UPF0149 family protein YgfB low > 80
Escherichia coli BW25113 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) 1.00 b2909 ygfB orf, hypothetical protein (VIMSS) 0.25 42
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 ECOLIN_RS16195 UPF0149 family protein YgfB low > 55
Escherichia coli ECRC99 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 KEDOAH_08640 ygfB UPF0149 family protein YgfB — —
Escherichia coli ECRC102 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NIAGMN_17265 ygfB UPF0149 family protein YgfB — —
Escherichia fergusonii Becca 1.00 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 1.00 EFB2_00993 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 1.00 OHPLBJKB_00806 hypothetical protein low > 73
Escherichia coli ECRC98 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 JDDGAC_23140 ygfB UPF0149 family protein YgfB low > 86
Escherichia coli ECOR27 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NOLOHH_11410 ygfB UPF0149 family protein YgfB low > 75
Escherichia coli ECRC62 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 BNILDI_09945 ygfB UPF0149 family protein YgfB 0.68 6
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.94 GFF3010 UPF0149 exported protein YgfB low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.85 EX28DRAFT_2961 yecA family protein low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.84 MPMX20_03768 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 BWI76_RS23900 hypothetical protein low > 92
Rahnella sp. WP5 0.85 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.65 EX31_RS21490 YecA family protein low > 89
Serratia liquefaciens MT49 0.83 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.63 IAI46_20880 YecA family protein low > 86
Pantoea sp. MT58 0.82 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 IAI47_03745 YecA family protein low > 76
Dickeya dadantii 3937 0.81 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.65 DDA3937_RS02400 YecA family protein low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.64 HGI48_RS02355 YecA family protein low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.63 DZA65_RS02460 YecA family protein low > 75
Erwinia tracheiphila SCR3 0.79 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.73 LU632_RS05875 YecA family protein low > 74
Pectobacterium carotovorum WPP14 0.78 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.62 HER17_RS19110 YecA family protein low > 75
Shewanella sp. ANA-3 0.68 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.25 Shewana3_3504 yecA family protein (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.30 CSW01_12530 YecA family protein low > 62
Shewanella amazonensis SB2B 0.66 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.21 Sama_2724 YgfB and YecA (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3224 hypothetical protein (RefSeq) 0.27 Shew_3067 yecA family protein (RefSeq) low > 60
Marinobacter adhaerens HP15 0.46 HP15_2926 ribosomal RNA small subunit methyltransferase E 0.18 HP15_3204 yecA family protein low > 73
Alteromonas macleodii MIT1002 0.45 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E 0.26 MIT1002_02985 yecA family protein low > 70
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0180 RNA methyltransferase, RsmE family 0.19 B158DRAFT_0532 Uncharacterized protein conserved in bacteria low > 40
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_08050 16S rRNA methyltransferase 0.16 AO353_08765 hypothetical protein low > 101
Pseudomonas sp. RS175 0.42 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.20 PFR28_04322 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.19 PFLU_RS28950 YecA family protein low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.19 PFLU_RS28950 YecA family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_13565 16S rRNA methyltransferase 0.19 AO356_13005 hypothetical protein 0.22 88
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.19 Pf6N2E2_4479 FIG001590: Putative conserved exported protein precursor low > 103
Pseudomonas putida KT2440 0.41 PP_4985 16S rRNA m3U1498 methyltransferase 0.17 PP_5201 conserved protein of unknown function, UPF0149 family low > 96
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.19 PfGW456L13_895 FIG001590: Putative conserved exported protein precursor low > 87
Pseudomonas simiae WCS417 0.41 PS417_26545 16S rRNA methyltransferase 0.19 PS417_27290 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.19 Pf1N1B4_2228 FIG001590: Putative conserved exported protein precursor — —
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.21 Psyr_0320 Protein of unknown function UPF0149 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.21 Psyr_0320 Protein of unknown function UPF0149 low > 86
Pseudomonas stutzeri RCH2 0.40 Psest_0305 RNA methyltransferase, RsmE family 0.20 Psest_0174 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas sp. S08-1 0.39 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.17 OH686_11210 Putative conserved exported protein precursor low > 80
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.19 Xcc-8004.1146.1 FIG001590: Putative conserved exported protein precursor — —
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.14 LRK54_RS11690 UPF0149 family protein low > 59
Rhodanobacter denitrificans MT42 0.35 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.14 LRK55_RS11415 UPF0149 family protein — —
Lysobacter sp. OAE881 0.35 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.17 ABIE51_RS17325 UPF0149 family protein low > 62

Not shown: 50 genomes with orthologs for ECD_02776 only; 0 genomes with orthologs for ECD_02741 only