Conservation of cofitness between ECD_00617 and ECD_02504 in Escherichia coli BL21

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00617 ribonucleoside hydrolase 1 1.0 ECD_02504 recombination and repair protein 0.65 6
Escherichia coli BW25113 1.00 b0651 rihA ribonucleoside hydrolase 1 (NCBI) 1.00 b2616 recN recombination and repair protein (NCBI) low > 76
Escherichia coli ECRC98 1.00 JDDGAC_10920 rihA pyrimidine-specific ribonucleoside hydrolase RihA 0.99 JDDGAC_24810 recN DNA repair protein RecN — —
Escherichia coli ECRC101 1.00 OKFHMN_07275 rihA pyrimidine-specific ribonucleoside hydrolase RihA 0.99 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia coli ECRC99 1.00 KEDOAH_20695 rihA pyrimidine-specific ribonucleoside hydrolase RihA 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC102 1.00 NIAGMN_05330 rihA pyrimidine-specific ribonucleoside hydrolase RihA 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC101 1.00 MCAODC_26490 rihA pyrimidine-specific ribonucleoside hydrolase RihA 0.99 MCAODC_11670 recN DNA repair protein RecN — —
Escherichia coli ECOR27 0.99 NOLOHH_23660 rihA pyrimidine-specific ribonucleoside hydrolase RihA 1.00 NOLOHH_12815 recN DNA repair protein RecN low > 57
Escherichia coli ECRC62 0.99 BNILDI_21670 rihA pyrimidine-specific ribonucleoside hydrolase RihA 1.00 BNILDI_11620 recN DNA repair protein RecN — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03062 Pyrimidine-specific ribonucleoside hydrolase RihA 1.00 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECOR38 0.99 HEPCGN_00955 rihA pyrimidine-specific ribonucleoside hydrolase RihA 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 85
Escherichia fergusonii Becca 0.99 EFB2_03448 Pyrimidine-specific ribonucleoside hydrolase RihA 0.99 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS03505 pyrimidine-specific ribonucleoside hydrolase RihA 0.99 ECOLIN_RS14775 DNA repair protein RecN low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4569 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) 0.92 GFF4162 DNA repair protein RecN low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS13490 pyrimidine-specific ribonucleoside hydrolase RihA 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Enterobacter sp. TBS_079 0.89 MPMX20_01302 Pyrimidine-specific ribonucleoside hydrolase RihA 0.86 MPMX20_03486 DNA repair protein RecN low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2320 Inosine-uridine nucleoside N-ribohydrolase 0.87 EX28DRAFT_2719 DNA repair protein RecN low > 76
Shewanella loihica PV-4 0.74 Shew_0697 rihA ribonucleoside hydrolase 1 (RefSeq) 0.54 Shew_1196 recombination and repair protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.73 Shewana3_3476 rihA ribonucleoside hydrolase 1 (RefSeq) 0.55 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.73 SO0811 inosine-uridine preferring nucleoside hydrolase family protein (NCBI ptt file) 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.62 IAI46_05975 pyrimidine-specific ribonucleoside hydrolase RihA 0.77 IAI46_19635 DNA repair protein RecN low > 86
Sinorhizobium meliloti 1021 0.43 SMc01105 uridine nucleosidase (EC 3.2.2.3) (from data) 0.27 SMc01877 DNA repair protein 0.25 40
Dinoroseobacter shibae DFL-12 0.42 Dshi_1158 Inosine/uridine-preferring nucleoside hydrolase (RefSeq) 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.40 PGA1_c11490 pyrimidine-specific ribonucleoside hydrolase RihA 0.24 PGA1_c09720 DNA repair protein RecN low > 62
Agrobacterium fabrum C58 0.40 Atu0374 inosine-uridine preferring nucleoside hydrolase 0.26 Atu2083 DNA repair protein RecN low > 89
Rahnella sp. WP5 0.40 EX31_RS20270 nucleoside hydrolase 0.76 EX31_RS21760 DNA repair protein RecN low > 89
Bifidobacterium breve UCC2003 0.39 BBR_RS17815 nucleoside hydrolase 0.15 BBR_RS14030 DNA repair protein RecN low > 34
Pectobacterium carotovorum WPP14 0.37 HER17_RS00105 nucleoside hydrolase 0.72 HER17_RS17420 DNA repair protein RecN low > 75
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF2248 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) 0.32 GFF829 DNA repair protein RecN low > 90
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_20845 uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data) 0.38 AO353_05660 DNA repair protein RecN low > 101
Variovorax sp. SCN45 0.34 GFF2986 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) 0.32 GFF2357 DNA repair protein RecN low > 127
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_6029 uridine nucleosidase (EC 3.2.2.3) (from data) 0.39 Pf1N1B4_1178 DNA repair protein RecN low > 87
Ralstonia solanacearum GMI1000 0.34 RS_RS12775 nucleoside hydrolase 0.35 RS_RS13275 DNA repair protein RecN low > 80
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_167 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) 0.39 Pf6N2E2_3370 DNA repair protein RecN low > 103
Ralstonia solanacearum PSI07 0.34 RPSI07_RS12145 nucleoside hydrolase 0.36 RPSI07_RS11890 DNA repair protein RecN low > 81
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_00940 uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data) 0.38 AO356_07510 DNA repair protein RecN low > 104
Pseudomonas sp. RS175 0.33 PFR28_02731 Pyrimidine-specific ribonucleoside hydrolase RihB 0.38 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas simiae WCS417 0.33 PS417_18375 hypothetical protein 0.39 PS417_24070 recombination and repair protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS20350 nucleoside hydrolase 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS20350 nucleoside hydrolase 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3906 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) 0.40 PfGW456L13_5106 DNA repair protein RecN low > 87
Pseudomonas putida KT2440 0.33 PP_2460 ribonucleoside hydrolase 0.37 PP_4729 factor used in recombination and DNA repair low > 96
Bosea sp. OAE506 0.29 ABIE41_RS05160 nucleoside hydrolase 0.25 ABIE41_RS12645 DNA repair protein RecN low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS15760 nucleoside hydrolase 0.22 A4249_RS02620 DNA repair protein RecN — —
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.1203.1 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) 0.30 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Mycobacterium tuberculosis H37Rv 0.21 Rv3393 Probable nucleoside hydrolase IunH (purine nucleosidase) 0.21 Rv1696 Probable DNA repair protein RecN (recombination protein N) low > 58
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS11810 nucleoside hydrolase 0.33 LRK54_RS17960 DNA repair protein RecN low > 59
Rhodanobacter denitrificans MT42 0.19 LRK55_RS11535 nucleoside hydrolase 0.33 LRK55_RS17815 DNA repair protein RecN low > 63

Not shown: 1 genomes with orthologs for ECD_00617 only; 52 genomes with orthologs for ECD_02504 only