Conservation of cofitness between ECD_03418 and ECD_02108 in Escherichia coli BL21

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03418 D-xylose transporter subunit 1.0 ECD_02108 microcin C ABC transporter permease 0.61 42
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00138 D-xylose-binding periplasmic protein 1.00 OHPLBJKB_01531 Inner membrane ABC transporter permease protein YejB low > 73
Escherichia coli BW25113 1.00 b3566 xylF D-xylose transporter subunit (NCBI) 1.00 b2178 yejB predicted oligopeptide transporter subunit (NCBI) low > 76
Escherichia coli ECRC102 1.00 NIAGMN_13710 xylF D-xylose ABC transporter substrate-binding protein 1.00 NIAGMN_21150 yejB Inner membrane ABC transporter permease protein YejB — —
Escherichia coli ECRC99 1.00 KEDOAH_12200 xylF D-xylose ABC transporter substrate-binding protein 1.00 KEDOAH_04800 yejB Inner membrane ABC transporter permease protein YejB — —
Escherichia coli ECRC98 1.00 JDDGAC_19580 xylF D-xylose ABC transporter substrate-binding protein 1.00 JDDGAC_27345 yejB Inner membrane ABC transporter permease protein YejB low > 86
Escherichia coli ECRC101 1.00 MCAODC_06465 xylF D-xylose ABC transporter substrate-binding protein 1.00 MCAODC_14435 yejB Inner membrane ABC transporter permease protein YejB low > 87
Escherichia coli ECRC100 1.00 OKFHMN_15950 xylF D-xylose ABC transporter substrate-binding protein 1.00 OKFHMN_23385 yejB Inner membrane ABC transporter permease protein YejB low > 80
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20395 D-xylose ABC transporter substrate-binding protein 1.00 ECOLIN_RS12735 microcin C ABC transporter permease YejB low > 55
Escherichia coli ECOR27 1.00 NOLOHH_07895 xylF D-xylose ABC transporter substrate-binding protein 1.00 NOLOHH_14960 yejB Inner membrane ABC transporter permease protein YejB low > 75
Escherichia coli ECRC62 1.00 BNILDI_03650 xylF D-xylose ABC transporter substrate-binding protein 1.00 BNILDI_13880 yejB Inner membrane ABC transporter permease protein YejB low > 75
Escherichia coli ECOR38 1.00 HEPCGN_14835 xylF D-xylose ABC transporter substrate-binding protein 1.00 HEPCGN_22650 yejB Inner membrane ABC transporter permease protein YejB low > 87
Escherichia fergusonii Becca 1.00 EFB2_00241 D-xylose-binding periplasmic protein 1.00 EFB2_01678 Inner membrane ABC transporter permease protein YejB low > 86
Klebsiella michiganensis M5al 0.91 BWI76_RS27030 D-xylose transporter subunit XylF 0.88 BWI76_RS19785 microcin C ABC transporter permease YejB low > 92
Enterobacter sp. TBS_079 0.89 MPMX20_00164 D-xylose-binding periplasmic protein 0.90 MPMX20_03144 Inner membrane ABC transporter permease protein YejB low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_3831 D-xylose ABC transporter, substrate-binding protein 0.92 EX28DRAFT_0383 ABC-type uncharacterized transport system, permease component low > 76
Rahnella sp. WP5 0.84 EX31_RS09760 D-xylose ABC transporter substrate-binding protein 0.79 EX31_RS19135 microcin C ABC transporter permease YejB low > 89
Pantoea sp. MT58 0.83 IAI47_00190 D-xylose ABC transporter substrate-binding protein 0.78 IAI47_06610 microcin C ABC transporter permease YejB low > 76
Serratia liquefaciens MT49 0.82 IAI46_00285 D-xylose ABC transporter substrate-binding protein 0.82 IAI46_17320 microcin C ABC transporter permease YejB low > 86
Dickeya dadantii 3937 0.82 DDA3937_RS20930 D-xylose ABC transporter substrate-binding protein 0.79 DDA3937_RS09185 microcin C ABC transporter permease YejB low > 74
Dickeya dianthicola ME23 0.82 DZA65_RS00315 D-xylose ABC transporter substrate-binding protein 0.79 DZA65_RS09530 microcin C ABC transporter permease YejB low > 75
Dickeya dianthicola 67-19 0.82 HGI48_RS00315 D-xylose ABC transporter substrate-binding protein 0.80 HGI48_RS09225 microcin C ABC transporter permease YejB low > 71
Pectobacterium carotovorum WPP14 0.79 HER17_RS21080 D-xylose ABC transporter substrate-binding protein 0.82 HER17_RS12925 microcin C ABC transporter permease YejB low > 75
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS22460 xylose ABC transporter substrate-binding protein 0.53 HSERO_RS17140 ABC transporter permease low > 78
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS18220 D-xylose ABC transporter substrate-binding protein 0.52 ABZR87_RS10685 microcin C ABC transporter permease YejB low > 80
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS32820 xylose ABC transporter substrate-binding protein 0.51 BPHYT_RS12380 ABC transporter permease low > 109
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_1455 Xylose ABC transporter, periplasmic xylose-binding protein XylF 0.63 Pf6N2E2_583 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) low > 103
Pseudomonas simiae WCS417 0.60 PS417_10940 sugar ABC transporter substrate-binding protein 0.63 PS417_12200 microcin ABC transporter permease low > 88
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_28505 sugar ABC transporter substrate-binding protein 0.63 AO356_24460 microcin ABC transporter permease low > 104
Paraburkholderia graminis OAS925 0.60 ABIE53_004930 D-xylose transport system substrate-binding protein 0.52 ABIE53_002549 microcin C transport system permease protein low > 113
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS25870 D-xylose ABC transporter substrate-binding protein 0.52 QEN71_RS06175 ABC transporter permease subunit low > 153
Pseudomonas sp. RS175 0.60 PFR28_02349 D-xylose-binding periplasmic protein 0.63 PFR28_01548 Inner membrane ABC transporter permease protein YejB low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_2884 xylose-binding protein 0.63 Psyr_1757 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_2884 xylose-binding protein 0.63 Psyr_1757 Binding-protein-dependent transport systems inner membrane component low > 86
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_03877 xylose-binding protein 0.52 H281DRAFT_00561 microcin C transport system permease protein low > 103
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 0.63 PFLU_RS12890 microcin C ABC transporter permease YejB low > 109
Pseudomonas fluorescens SBW25 0.59 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 0.63 PFLU_RS12890 microcin C ABC transporter permease YejB low > 109
Ralstonia solanacearum GMI1000 0.58 RS_RS24945 D-xylose ABC transporter substrate-binding protein 0.54 RS_RS05855 microcin C ABC transporter permease YejB low > 80
Ralstonia solanacearum PSI07 0.56 RPSI07_RS07635 D-xylose ABC transporter substrate-binding protein 0.51 RPSI07_RS18335 microcin C ABC transporter permease YejB low > 81
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS23505 D-xylose ABC transporter substrate-binding protein 0.54 RALBFv3_RS15040 microcin C ABC transporter permease YejB — —
Ralstonia solanacearum UW163 0.55 UW163_RS16755 D-xylose ABC transporter substrate-binding protein 0.54 UW163_RS12510 microcin C ABC transporter permease YejB — —
Rhizobium sp. OAE497 0.38 ABIE40_RS14020 D-xylose ABC transporter substrate-binding protein 0.61 ABIE40_RS00620 microcin C ABC transporter permease YejB low > 107
Variovorax sp. SCN45 0.38 GFF5603 D-xylose ABC transporter, substrate-binding protein XylF 0.52 GFF228 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) low > 127
Variovorax sp. OAS795 0.37 ABID97_RS01175 D-xylose ABC transporter substrate-binding protein 0.54 ABID97_RS16515 ABC transporter permease subunit low > 91
Sinorhizobium meliloti 1021 0.37 SM_b20902 sugar uptake ABC transporter substrate-binding protein precursor 0.61 SMc02831 ABC transporter permease — —
Phaeobacter inhibens DSM 17395 0.37 PGA1_262p00430 glucose transporter, periplasmic substrate-binding component (from data) 0.61 PGA1_c30170 ABC transporter permease protein low > 62
Dinoroseobacter shibae DFL-12 0.36 Dshi_2000 xylitol ABC transporter, periplasmic substrate-binding protein (from data) 0.63 Dshi_0656 binding-protein-dependent transport systems inner membrane component (RefSeq) low > 64
Agrobacterium fabrum C58 0.31 Atu3576 xylose ABC transporter substrate-binding protein 0.62 Atu0188 ABC transporter, membrane spanning protein (peptide) low > 89
Azospirillum sp. SherDot2 0.30 MPMX19_03028 D-xylose-binding periplasmic protein 0.65 MPMX19_02169 Inner membrane ABC transporter permease protein YejB low > 112
Acidovorax sp. GW101-3H11 0.28 Ac3H11_610 L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) 0.55 Ac3H11_2910 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) low > 79
Azospirillum brasilense Sp245 0.27 AZOBR_RS31240 sugar ABC transporter substrate-binding protein 0.65 AZOBR_RS03820 microcin C ABC transporter permease YejB low > 97

Not shown: 1 genomes with orthologs for ECD_03418 only; 18 genomes with orthologs for ECD_02108 only