| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 1.0 | ECD_01160 | | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I | 0.79 | 8 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | BNILDI_18910 | dsbB | disulfide bond formation protein DsbB | low | > 75 |
| Escherichia coli BW25113 | 1.00 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 1.00 | b1185 | dsbB | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | low | > 76 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | HEPCGN_24730 | dsbB | disulfide bond formation protein DsbB | 0.92 | 43 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 1.00 | OHPLBJKB_02504 | | Disulfide bond formation protein B | low | > 73 |
| Escherichia fergusonii Becca | 1.00 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.99 | EFB2_02747 | | Disulfide bond formation protein B | low | > 86 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | NOLOHH_20745 | dsbB | disulfide bond formation protein DsbB | low | > 75 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | JDDGAC_06240 | dsbB | disulfide bond formation protein DsbB | — | — |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | OKFHMN_28270 | dsbB | disulfide bond formation protein DsbB | low | > 80 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | NIAGMN_27950 | dsbB | disulfide bond formation protein DsbB | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | MCAODC_21900 | dsbB | disulfide bond formation protein DsbB | low | > 87 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.00 | KEDOAH_25285 | dsbB | disulfide bond formation protein DsbB | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.99 | ECOLIN_RS07165 | | disulfide bond formation protein DsbB | low | > 55 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.98 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.79 | GFF2808 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | low | > 78 |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.85 | BWI76_RS17755 | | disulfide bond formation protein B | — | — |
| Enterobacter asburiae PDN3 | 0.92 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | 0.83 | EX28DRAFT_0762 | | Disulfide bond formation protein DsbB | — | — |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | 0.83 | MPMX20_02703 | | Disulfide bond formation protein B | — | — |
| Pantoea sp. MT58 | 0.85 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | IAI47_08875 | | disulfide bond formation protein DsbB | — | — |
| Erwinia tracheiphila SCR3 | 0.85 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.73 | LU632_RS13085 | dsbB | disulfide bond formation protein DsbB | 0.61 | 67 |
| Rahnella sp. WP5 | 0.82 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.66 | EX31_RS10515 | | disulfide bond formation protein DsbB | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.81 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | HER17_RS11225 | | disulfide bond formation protein DsbB | low | > 75 |
| Serratia liquefaciens MT49 | 0.80 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | IAI46_14485 | | disulfide bond formation protein DsbB | — | — |
| Dickeya dadantii 3937 | 0.80 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.74 | DDA3937_RS11185 | | disulfide bond formation protein DsbB | 0.60 | 33 |
| Dickeya dianthicola 67-19 | 0.80 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.74 | HGI48_RS11220 | | disulfide bond formation protein DsbB | low | > 71 |
| Dickeya dianthicola ME23 | 0.80 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.74 | DZA65_RS11565 | | disulfide bond formation protein DsbB | low | > 75 |
| Shewanella loihica PV-4 | 0.66 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | 0.38 | Shew_2176 | | disulphide bond formation protein DsbB (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | 0.38 | Shewana3_1633 | | disulfide bond formation protein B (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.63 | Sama_1988 | | pseudouridylate synthase (RefSeq) | 0.38 | Sama_1926 | | disulfide bond formation protein B (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.63 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.46 | CSW01_09520 | | disulfide bond formation protein B | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.63 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | 0.36 | MIT1002_02581 | | Disulfide oxidoreductase | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.55 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | 0.20 | B158DRAFT_0682 | | Disulfide bond formation protein DsbB | low | > 40 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.14 | Pf6N2E2_5316 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.55 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.16 | Psyr_1140 | | Disulfide bond formation protein DsbB | low | > 86 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.14 | PFR28_00241 | | Disulfide bond formation protein B | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.55 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.16 | Psyr_1140 | | Disulfide bond formation protein DsbB | low | > 86 |
| Pseudomonas simiae WCS417 | 0.54 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.16 | PS417_23395 | | disulfide bond formation protein B | — | — |
| Pseudomonas fluorescens SBW25 | 0.54 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.15 | PFLU_RS25225 | | disulfide bond formation protein B | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.54 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.15 | PFLU_RS25225 | | disulfide bond formation protein B | low | > 109 |
| Pseudomonas sp. S08-1 | 0.54 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.16 | OH686_13920 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.53 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.15 | AO353_15445 | | disulfide bond formation protein B | 0.34 | 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.15 | Pf1N1B4_2189 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.51 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.17 | PfGW456L13_860 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | low | > 87 |
| Dechlorosoma suillum PS | 0.47 | Dsui_2437 | | pseudouridine synthase, RluA family | 0.14 | Dsui_1533 | | disulfide bond formation protein DsbB | low | > 51 |
| Ralstonia solanacearum UW163 | 0.47 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.17 | UW163_RS13545 | | disulfide bond formation protein B | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.47 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.17 | RALBFv3_RS00215 | | disulfide bond formation protein B | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS05155 | | RluA family pseudouridine synthase | 0.17 | RS_RS06885 | | disulfide bond formation protein B | — | — |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.15 | BPHYT_RS15075 | | dihydrokaempferol 4-reductase | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.17 | RPSI07_RS17265 | | disulfide bond formation protein B | — | — |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.19 | ABZR87_RS11675 | | disulfide bond formation protein B | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.14 | H281DRAFT_03960 | | disulfide bond formation protein DsbB | — | — |
| Variovorax sp. SCN45 | 0.44 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.19 | GFF1291 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | — | — |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS08250 | | RluA family pseudouridine synthase | 0.16 | ABID97_RS15590 | | disulfide bond formation protein B | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.18 | GFF4299 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | low | > 90 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | 0.15 | MPMX26_02949 | | Disulfide bond formation protein B | low | > 36 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.19 | Ac3H11_908 | | Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation | — | — |