Conservation of cofitness between DZA65_RS16955 and DZA65_RS21245 in Dickeya dianthicola ME23

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS16955 uracil-DNA glycosylase 1.0 DZA65_RS21245 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.39 15
Dickeya dianthicola 67-19 0.99 HGI48_RS15875 uracil-DNA glycosylase 0.99 HGI48_RS20200 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 71
Dickeya dadantii 3937 0.97 DDA3937_RS15790 uracil-DNA glycosylase 0.98 DDA3937_RS20055 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 74
Pectobacterium carotovorum WPP14 0.87 HER17_RS05755 uracil-DNA glycosylase 0.72 HER17_RS01155 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 75
Serratia liquefaciens MT49 0.82 IAI46_19620 uracil-DNA glycosylase 0.71 IAI46_00600 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 86
Rahnella sp. WP5 0.82 EX31_RS21775 uracil-DNA glycosylase 0.73 EX31_RS15065 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 89
Vibrio cholerae E7946 ATCC 55056 0.78 CSW01_11950 uracil-DNA glycosylase 0.63 CSW01_04705 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 62
Escherichia coli BW25113 0.77 b2580 ung uracil-DNA glycosylase (NCBI) 0.71 b3786 rffE UDP-N-acetyl glucosamine-2-epimerase (NCBI) low > 76
Escherichia coli ECRC62 0.77 BNILDI_11815 ung uracil-DNA glycosylase 0.71 BNILDI_04820 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_01126 Uracil-DNA glycosylase 0.71 OHPLBJKB_04268 UDP-N-acetylglucosamine 2-epimerase low > 73
Escherichia fergusonii Becca 0.77 EFB2_01316 Uracil-DNA glycosylase 0.71 EFB2_04853 UDP-N-acetylglucosamine 2-epimerase low > 86
Escherichia coli ECOR27 0.77 NOLOHH_13010 ung uracil-DNA glycosylase 0.71 NOLOHH_06705 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 75
Escherichia coli Nissle 1917 0.77 ECOLIN_RS14600 uracil-DNA glycosylase 0.71 ECOLIN_RS21735 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 55
Escherichia coli ECRC101 0.76 MCAODC_11870 ung uracil-DNA glycosylase 0.71 MCAODC_05075 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 87
Escherichia coli ECRC100 0.76 OKFHMN_21340 ung uracil-DNA glycosylase 0.71 OKFHMN_14570 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 80
Escherichia coli ECRC99 0.76 KEDOAH_06880 ung uracil-DNA glycosylase 0.71 KEDOAH_13580 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) — —
Escherichia coli ECRC98 0.76 JDDGAC_25005 ung uracil-DNA glycosylase 0.71 JDDGAC_18195 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 86
Escherichia coli ECRC102 0.76 NIAGMN_19110 ung uracil-DNA glycosylase 0.71 NIAGMN_12325 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) — —
Escherichia coli BL21 0.76 ECD_02474 uracil-DNA-glycosylase 0.71 ECD_03664 UDP-N-acetyl glucosamine-2-epimerase low > 61
Escherichia coli ECOR38 0.76 HEPCGN_20465 ung uracil-DNA glycosylase 0.70 HEPCGN_13280 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 87
Enterobacter sp. TBS_079 0.76 MPMX20_03449 Uracil-DNA glycosylase 0.67 MPMX20_04487 UDP-N-acetylglucosamine 2-epimerase low > 85
Pantoea sp. MT58 0.76 IAI47_04825 uracil-DNA glycosylase 0.71 IAI47_18510 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF2100 Uracil-DNA glycosylase, family 1 0.68 GFF2887 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) low > 78
Enterobacter asburiae PDN3 0.75 EX28DRAFT_0067 Uracil-DNA glycosylase (EC 3.2.2.-) 0.70 EX28DRAFT_4456 UDP-N-acetylglucosamine 2-epimerase low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS21380 uracil-DNA glycosylase 0.74 BWI76_RS01090 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 92
Erwinia tracheiphila SCR3 0.74 LU632_RS16970 ung uracil-DNA glycosylase 0.73 LU632_RS24240 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 74
Shewanella amazonensis SB2B 0.59 Sama_1229 putative uracil-DNA glycosylase (RefSeq) 0.66 Sama_2261 UDP-N-acetylglucosamine 2-epimerase (RefSeq) — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_04635 uracil-DNA glycosylase 0.49 AO356_00800 UDP-N-acetylglucosamine 2-epimerase low > 104
Mucilaginibacter yixingensis YX-36 DSM 26809 0.58 ABZR88_RS00735 uracil-DNA glycosylase 0.16 ABZR88_RS12760 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase low > 71
Pseudomonas sp. S08-1 0.58 OH686_05820 uracil-DNA glycosylase 0.65 OH686_14385 UDP-N-acetylglucosamine 2-epimerase low > 80
Pseudomonas sp. RS175 0.58 PFR28_00677 Uracil-DNA glycosylase 0.64 PFR28_00916 UDP-N-acetylglucosamine 2-epimerase low > 88
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_17560 uracil-DNA glycosylase 0.49 AO353_01990 UDP-N-acetylglucosamine 2-epimerase low > 101
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_2772 Uracil-DNA glycosylase, family 1 0.48 Pf6N2E2_201 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) 0.23 39
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_4530 Uracil-DNA glycosylase, family 1 0.65 PfGW456L13_3995 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) low > 87
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_1441 Uracil-DNA glycosylase (EC 3.2.2.-) 0.64 B158DRAFT_2351 UDP-N-acetylglucosamine 2-epimerase low > 40
Pseudomonas simiae WCS417 0.57 PS417_07035 uracil-DNA glycosylase 0.16 PS417_08175 UDP-N-acetylglucosamine 2-epimerase — —
Pseudomonas fluorescens SBW25 0.57 PFLU_RS07110 uracil-DNA glycosylase 0.15 PFLU_RS08155 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 109
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS07110 uracil-DNA glycosylase 0.15 PFLU_RS08155 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 109
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_2393 uracil-DNA glycosylase 0.20 Echvi_1489 UDP-N-acetylglucosamine 2-epimerase low > 79
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS12580 uracil-DNA glycosylase 0.41 ABZR86_RS01495 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 74
Pseudomonas stutzeri RCH2 0.56 Psest_3107 uracil-DNA glycosylase 0.57 Psest_0249 UDP-N-acetylglucosamine 2-epimerase low > 67
Marinobacter adhaerens HP15 0.56 HP15_769 uracil-DNA glycosylase 0.65 HP15_2382 UDP-N-acetylglucosamine 2-epimerase low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_3970 Uracil-DNA glycosylase 0.53 Psyr_1032 UDP-N-Acetylglucosamine 2-epimerase low > 86
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_3970 Uracil-DNA glycosylase 0.53 Psyr_1032 UDP-N-Acetylglucosamine 2-epimerase low > 86
Rhodanobacter denitrificans MT42 0.55 LRK55_RS10645 uracil-DNA glycosylase 0.17 LRK55_RS12980 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 63
Pedobacter sp. GW460-11-11-14-LB5 0.55 CA265_RS10890 uracil-DNA glycosylase 0.22 CA265_RS19270 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.54 CA264_04730 uracil-DNA glycosylase 0.08 CA264_12445 UDP-N-acetylglucosamine 2-epimerase (hydrolyzing) — —
Pseudomonas putida KT2440 0.54 PP_1413 Uracil-DNA glycosylase 0.62 PP_1811 UDP-N-acetylglucosamine-2-epimerase low > 96
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2524 Uracil-DNA glycosylase (EC 3.2.2.-) 0.53 Ga0059261_3102 UDP-N-Acetylglucosamine 2-epimerase (EC 5.1.3.14) — —
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS07445 uracil-DNA glycosylase 0.15 HMPREF1058_RS03760 UDP-N-acetyl glucosamine 2-epimerase low > 67
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS21355 uracil-DNA glycosylase 0.14 ABI39_RS17460 UDP-N-acetyl glucosamine 2-epimerase low > 72
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS11205 uracil-DNA glycosylase 0.56 HMPREF1078_RS02610 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 61
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS08600 uracil-DNA glycosylase 0.18 HMPREF1181_RS14875 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 56
Acinetobacter radioresistens SK82 0.49 MPMX26_01231 Uracil-DNA glycosylase 0.39 MPMX26_00920 UDP-N-acetylglucosamine 2-epimerase low > 36
Bacteroides ovatus ATCC 8483 0.49 BACOVA_03224 uracil-DNA glycosylase 0.15 BACOVA_03974 UDP-N-acetylglucosamine 2-epimerase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.49 BT2130 uracil-DNA glycosylase (NCBI ptt file) 0.59 BT2944 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) low > 81
Variovorax sp. OAS795 0.37 ABID97_RS05285 uracil-DNA glycosylase 0.20 ABID97_RS02160 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) low > 91

Not shown: 23 genomes with orthologs for DZA65_RS16955 only; 14 genomes with orthologs for DZA65_RS21245 only