Conservation of cofitness between CSW01_03930 and CSW01_16925 in Vibrio cholerae E7946 ATCC 55056

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 1.0 CSW01_16925 cytochrome b 0.42 18
Escherichia coli BW25113 0.74 b2517 yfgB predicted enzyme (NCBI) 0.45 b1057 yceJ predicted cytochrome b561 (NCBI) low > 76
Escherichia coli ECOR27 0.74 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 NOLOHH_21285 yceJ Cytochrome b561-like protein low > 76
Escherichia coli Nissle 1917 0.74 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 ECOLIN_RS06135 cytochrome b — —
Escherichia fergusonii Becca 0.74 EFB2_01373 Dual-specificity RNA methyltransferase RlmN 0.45 EFB2_02917 Cytochrome b561 low > 86
Escherichia coli ECRC62 0.74 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 BNILDI_19445 yceJ Cytochrome b561-like protein low > 75
Escherichia coli BL21 0.74 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.45 ECD_01053 putative cytochrome b561 low > 61
Escherichia coli ECOR38 0.74 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 HEPCGN_23735 yceJ Cytochrome b561-like protein low > 88
Escherichia coli ECRC102 0.74 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 NIAGMN_24075 yceJ Cytochrome b561-like protein low > 80
Escherichia coli ECRC98 0.74 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 JDDGAC_07415 yceJ Cytochrome b561-like protein low > 87
Escherichia coli ECRC99 0.74 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 KEDOAH_24000 yceJ Cytochrome b561-like protein — —
Escherichia coli ECRC101 0.74 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 MCAODC_23115 yceJ Cytochrome b561-like protein low > 87
Escherichia coli ECRC100 0.74 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 OKFHMN_03755 yceJ Cytochrome b561-like protein low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.44 GFF3336 Cytochrome B561 low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.45 OHPLBJKB_02608 Cytochrome b561 low > 74
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.43 EX28DRAFT_1874 Cytochrome B561 low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.45 MPMX20_01737 Cytochrome b561 low > 85
Erwinia tracheiphila SCR3 0.74 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.39 LU632_RS10310 cytochrome b low > 73
Erwinia amylovora T8 0.73 OLJFJH_10435 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 OLJFJH_15690 cytochrome b low > 58
Dickeya dadantii 3937 0.73 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.46 DDA3937_RS13185 cytochrome b low > 74
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS14930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.39 PagCFBP13505_RS05090 cytochrome b low > 74
Dickeya dianthicola ME23 0.73 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.44 DZA65_RS13725 cytochrome b low > 75
Dickeya dianthicola 67-19 0.73 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.44 HGI48_RS13250 cytochrome b low > 71
Serratia liquefaciens MT49 0.73 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.46 IAI46_09695 cytochrome b low > 87
Erwinia tracheiphila HP pepo 2.2 0.73 IJEDHG_02785 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.46 IJEDHG_20950 Cytochrome b low > 61
Pectobacterium carotovorum WPP14 0.73 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 HER17_RS08580 cytochrome b low > 75
Pantoea sp. MT58 0.73 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.42 IAI47_12240 cytochrome b low > 76
Rahnella sp. WP5 0.72 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.46 EX31_RS24345 cytochrome b low > 89
Shewanella loihica PV-4 0.71 Shew_1287 hypothetical protein (RefSeq) 0.47 Shew_1120 cytochrome B561 (RefSeq) low > 60
Shewanella oneidensis MR-1 0.71 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) 0.49 SO3371 hypothetical Cytochrome B561 (NCBI ptt file) 0.20 56
Shewanella sp. ANA-3 0.71 Shewana3_1226 hypothetical protein (RefSeq) 0.55 Shewana3_1178 cytochrome B561 (RefSeq) low > 73
Shewanella amazonensis SB2B 0.69 Sama_2368 hypothetical protein (RefSeq) 0.36 Sama_0949 cytochrome b561 (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.69 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN 0.56 MIT1002_03883 hypothetical protein low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.42 Psyr_0456 Cytochrome B561, bacterial low > 86
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase 0.24 B158DRAFT_0324 Cytochrome B561 low > 40
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.42 Psyr_0456 Cytochrome B561, bacterial low > 86
Pseudomonas orientalis W4I3 0.55 QF045_RS25380 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.45 QF045_RS00930 cytochrome b low > 93
Pseudomonas simiae WCS417 0.55 PS417_23160 50S rRNA methyltransferase 0.45 PS417_26535 cytochrome B561 low > 88
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.45 PFLU_RS28190 cytochrome b low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.45 PFLU_RS28190 cytochrome b low > 109
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_04784 Dual-specificity RNA methyltransferase RlmN 0.46 GEMAOFIL_05438 Cytochrome b561 low > 96
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.45 AO353_08040 cytochrome B low > 101
Pseudomonas sp. SVBP6 0.55 COO64_RS03935 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.43 COO64_RS17460 cytochrome b low > 93
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.48 Pf6N2E2_4633 Cytochrome B561 — —
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.49 AO356_13580 cytochrome B low > 104
Pseudomonas sp. DMC3 0.54 GFF4342 Dual-specificity RNA methyltransferase RlmN 0.45 GFF176 Cytochrome b561 low > 89
Pseudomonas aeruginosa PUPa3 0.54 DQ20_RS43210 rlmN;go_function=S-adenosylmethionine-dependent 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 DQ20_RS37210 cytochrome b/b6 domain-containing protein low > 101
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.41 PfGW456L13_1046 Cytochrome B561 low > 87
Pseudomonas aeruginosa MRSN321 0.54 DY961_RS13890 rlmN;go_function=S-adenosylmethionine-dependent 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 DY961_RS22095 cytochrome b/b6 domain-containing protein low > 100
Pseudomonas aeruginosa PA14 0.54 IKLFDK_19600 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 IKLFDK_23310 cytochrome b low > 98
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.45 Pf1N1B4_2380 Cytochrome B561 — —
Pseudomonas segetis P6 0.54 MPMX49_01515 Dual-specificity RNA methyltransferase RlmN 0.46 MPMX49_00642 Cytochrome b561 low > 75
Pseudomonas stutzeri RCH2 0.54 Psest_1259 23S rRNA m2A2503 methyltransferase 0.48 Psest_0307 Cytochrome B561 low > 67
Pseudomonas sp. RS175 0.54 PFR28_00294 Dual-specificity RNA methyltransferase RlmN 0.48 PFR28_04206 Cytochrome b561 low > 88
Pseudomonas putida KT2440 0.54 PP_0850 Dual-specificity RNA methyltransferase RlmN 0.46 PP_4982 putative cytochrome b561, iron-regulated low > 96
Pseudomonas sp. BP01 0.53 JOY50_RS22780 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 JOY50_RS09785 cytochrome b low > 84
Pseudomonas sp. S08-1 0.53 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.50 OH686_10845 Cytochrome b561-related 2 low > 80
Marinobacter adhaerens HP15 0.52 HP15_1490 conserved hypothetical protein 0.49 HP15_2524 inner membrane protein low > 73
Acinetobacter radioresistens SK82 0.50 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN 0.19 MPMX26_01603 Cytochrome b561 — —
Acinetobacter baumannii LAC-4 0.50 RR41_RS16460 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.20 RR41_RS09975 cytochrome b low > 55
Variovorax sp. SCN45 0.47 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.17 GFF695 Cytochrome B561 low > 127
Castellaniella sp019104865 MT123 0.43 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.20 ABCV34_RS06055 cytochrome b low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A3329 hypothetical protein (NCBI) 0.30 Rru_A3682 Cytochrome B561 (NCBI) low > 58
Azospirillum brasilense Sp245 0.38 AZOBR_RS00800 50S rRNA methyltransferase 0.16 AZOBR_RS21975 hypothetical protein low > 97
Agrobacterium fabrum C58 0.37 Atu2673 hypothetical protein 0.20 Atu1483 cytochrome b561 low > 89
Bosea sp. OAE506 0.36 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.15 ABIE41_RS11040 cytochrome b/b6 domain-containing protein low > 77
Xanthobacter sp. DMC5 0.36 GFF1781 Dual-specificity RNA methyltransferase RlmN 0.21 GFF3925 Cytochrome b561 — —
Sphingobium sp. HT1-2 0.34 GFF717 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.21 GFF961 Cytochrome b561 low > 95

Not shown: 53 genomes with orthologs for CSW01_03930 only; 0 genomes with orthologs for CSW01_16925 only