Conservation of cofitness between CSW01_10060 and CSW01_14670 in Vibrio cholerae E7946 ATCC 55056

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10060 YchF/TatD family DNA exonuclease 1.0 CSW01_14670 transcriptional repressor PurR 0.40 19
Dickeya dadantii 3937 0.57 DDA3937_RS13085 metal-dependent hydrolase 0.58 DDA3937_RS00055 ribose operon transcriptional repressor RbsR low > 74
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS05300 metal-dependent hydrolase 0.57 PagCFBP13505_RS18960 ribose operon transcriptional repressor RbsR low > 74
Pantoea sp. MT58 0.57 IAI47_12035 metal-dependent hydrolase 0.57 IAI47_00375 ribose operon transcriptional repressor RbsR low > 76
Rahnella sp. WP5 0.57 EX31_RS24470 metal-dependent hydrolase 0.60 EX31_RS06195 ribose operon transcriptional repressor RbsR low > 89
Dickeya dianthicola ME23 0.57 DZA65_RS13620 metal-dependent hydrolase 0.54 DZA65_RS22290 substrate-binding domain-containing protein low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS13150 metal-dependent hydrolase 0.57 HGI48_RS21310 ribose operon transcriptional repressor RbsR low > 71
Serratia liquefaciens MT49 0.56 IAI46_09825 metal-dependent hydrolase 0.56 IAI46_25050 ribose operon transcriptional repressor RbsR low > 87
Erwinia amylovora T8 0.56 OLJFJH_15495 metal-dependent hydrolase 0.56 OLJFJH_05415 ribose operon transcriptional repressor RbsR low > 58
Pectobacterium carotovorum WPP14 0.56 HER17_RS08685 metal-dependent hydrolase 0.57 HER17_RS21525 ribose operon transcriptional repressor RbsR low > 75
Klebsiella michiganensis M5al 0.55 BWI76_RS11125 metal-dependent hydrolase 0.58 BWI76_RS00295 transcriptional regulator RbsR low > 92
Enterobacter sp. TBS_079 0.54 MPMX20_01780 putative metal-dependent hydrolase YcfH 0.56 MPMX20_04614 Ribose operon repressor low > 85
Klebsiella pneumoniae MKP103 0.54 KDGMDA_18730 metal-dependent hydrolase 0.56 KDGMDA_08900 ribose operon transcriptional repressor RbsR low > 95
Escherichia coli ECRC100 0.54 OKFHMN_03540 ycfH metal-dependent hydrolase 0.55 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR low > 79
Escherichia coli ECRC101 0.54 MCAODC_22900 ycfH metal-dependent hydrolase 0.55 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli BW25113 0.54 b1100 ycfH predicted metallodependent hydrolase (NCBI) 0.56 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) low > 76
Escherichia coli BL21 0.54 ECD_01096 putative DNase 0.55 ECD_03639 transcriptional repressor of ribose metabolism low > 61
Escherichia coli ECRC62 0.54 BNILDI_19230 ycfH metal-dependent hydrolase 0.56 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECRC99 0.54 KEDOAH_24215 ycfH metal-dependent hydrolase 0.55 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC102 0.54 NIAGMN_24290 ycfH metal-dependent hydrolase 0.55 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR low > 80
Escherichia coli ECRC98 0.54 JDDGAC_07200 ycfH metal-dependent hydrolase 0.55 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli Nissle 1917 0.54 ECOLIN_RS06350 metal-dependent hydrolase 0.54 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR low > 55
Escherichia coli ECOR38 0.54 HEPCGN_23940 ycfH metal-dependent hydrolase 0.55 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR low > 88
Escherichia coli ECOR27 0.54 NOLOHH_21070 ycfH metal-dependent hydrolase 0.55 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_1829 hydrolase, TatD family 0.57 EX28DRAFT_4029 transcriptional regulator, LacI family low > 76
Escherichia fergusonii Becca 0.53 EFB2_02875 putative metal-dependent hydrolase YcfH 0.56 EFB2_04880 Ribose operon repressor low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF3382 Putative deoxyribonuclease YcfH 0.55 GFF1704 Ribose operon repressor low > 78
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_5960 Putative deoxyribonuclease YcfH 0.39 Pf6N2E2_164 Ribose operon repressor low > 103
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_01325 hydrolase TatD 0.40 AO353_20830 LacI family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_20205 hydrolase TatD 0.39 AO356_00955 LacI family transcriptional regulator low > 104
Pseudomonas sp. RS175 0.51 PFR28_03002 putative metal-dependent hydrolase YcfH 0.39 PFR28_02734 Ribose operon repressor low > 88
Pseudomonas fluorescens SBW25 0.51 PFLU_RS23020 TatD family hydrolase 0.40 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS23020 TatD family hydrolase 0.40 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.51 PS417_21405 hydrolase TatD 0.39 PS417_18390 LacI family transcriptional regulator low > 88
Pseudomonas putida KT2440 0.51 PP_1967 tRNA D-aminoacylase 0.37 PP_2457 DNA-binding transcriptional repressor low > 96
Pseudomonas aeruginosa PA14 0.50 IKLFDK_15055 hydrolase TatD 0.40 IKLFDK_09515 LacI family transcriptional regulator low > 98
Pseudomonas aeruginosa PUPa3 0.50 DQ20_RS33405 TatD family hydrolase 0.40 DQ20_RS38245 LacI family DNA-binding transcriptional regulator low > 101
Pseudomonas lactucae CFBP13502 0.50 GEMAOFIL_04425 putative metal-dependent hydrolase YcfH 0.39 GEMAOFIL_03908 HTH-type transcriptional repressor PurR low > 96
Pseudomonas aeruginosa MRSN321 0.50 DY961_RS02180 TatD family hydrolase 0.40 DY961_RS28760 LacI family DNA-binding transcriptional regulator low > 100
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_2112 Putative deoxyribonuclease YcfH 0.39 PfGW456L13_3909 Ribose operon repressor low > 87
Pseudomonas sp. DMC3 0.50 GFF4749 putative metal-dependent hydrolase YcfH 0.39 GFF900 HTH-type transcriptional repressor PurR low > 89
Pseudomonas orientalis W4I3 0.49 QF045_RS23485 TatD family hydrolase 0.40 QF045_RS20540 LacI family DNA-binding transcriptional regulator low > 93
Castellaniella sp019104865 MT123 0.49 ABCV34_RS03960 TatD family hydrolase 0.24 ABCV34_RS07410 LacI family DNA-binding transcriptional regulator low > 48
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_420 Putative deoxyribonuclease YcfH 0.39 Pf1N1B4_6032 Ribose operon repressor low > 87
Pseudomonas sp. SVBP6 0.48 COO64_RS05770 TatD family hydrolase 0.40 COO64_RS10340 LacI family DNA-binding transcriptional regulator low > 93
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS10885 DNAase 0.24 RR42_RS34650 LacI family transcriptional regulator 0.37 13
Ralstonia solanacearum GMI1000 0.47 RS_RS09020 TatD family deoxyribonuclease 0.39 RS_RS05020 LacI family transcriptional regulator low > 80
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS09640 DNAase 0.38 BPHYT_RS11205 LacI family transcription regulator low > 109
Azospirillum brasilense Sp245 0.45 AZOBR_RS08795 LuxR family transcriptional regulator 0.23 AZOBR_RS32320 LacI family transcriptional regulator low > 97
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_00931 TatD DNase family protein 0.38 H281DRAFT_05228 transcriptional regulator, LacI family low > 103
Paraburkholderia graminis OAS925 0.44 ABIE53_002166 TatD DNase family protein 0.38 ABIE53_002322 LacI family transcriptional regulator low > 113
Sphingobium sp. HT1-2 0.44 GFF5304 Uncharacterized metal-dependent hydrolase YcfH 0.25 GFF3694 Transcriptional regulator, LacI family low > 95
Azospirillum sp. SherDot2 0.44 MPMX19_01469 putative metal-dependent hydrolase YcfH 0.33 MPMX19_02768 Ribose operon repressor low > 112
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF4665 Putative deoxyribonuclease YcfH 0.23 GFF1544 Transcriptional regulatory protein low > 90
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS21805 TatD family hydrolase 0.40 QEN71_RS07355 LacI family DNA-binding transcriptional regulator low > 153
Acidovorax sp. GW101-3H11 0.42 Ac3H11_2488 Putative deoxyribonuclease YcfH 0.36 Ac3H11_1840 Ribose operon repressor low > 79
Variovorax sp. OAS795 0.42 ABID97_RS16000 TatD family hydrolase 0.37 ABID97_RS24770 LacI family DNA-binding transcriptional regulator low > 91
Variovorax sp. SCN45 0.42 GFF34 Uncharacterized metal-dependent hydrolase YcfH 0.36 GFF2137 Ribose operon repressor 0.45 112
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.27 CCNA_01556 LacI-family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.27 CCNA_01556 LacI-family transcriptional regulator low > 66

Not shown: 45 genomes with orthologs for CSW01_10060 only; 10 genomes with orthologs for CSW01_14670 only