| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09640 | | C4-dicarboxylate ABC transporter permease | 1.0 | CSW01_10535 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.56 | 1 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.28 | PFR28_00884 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | low | > 88 |
| Shewanella oneidensis MR-1 | 0.56 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | 0.22 | SO3073 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Pseudomonas sp. DMC3 | 0.56 | GFF1144 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.29 | GFF4698 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | low | > 89 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.24 | Shewana3_1474 | | FAD dependent oxidoreductase (RefSeq) | low | > 73 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS05060 | | TRAP transporter large permease | 0.16 | ABCV34_RS09580 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 48 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_4270 | | TRAP transporter, DctM subunit | 0.29 | Psest_1634 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | low | > 67 |
| Pseudomonas aeruginosa MRSN321 | 0.54 | DY961_RS11695 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.28 | DY961_RS15640 | mnmC;go_function=tRNA | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.54 | DQ20_RS50405 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.28 | DQ20_RS41435 | mnmC;go_function=tRNA | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.54 | IKLFDK_27640 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.28 | IKLFDK_17740 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 98 |
| Pseudomonas segetis P6 | 0.53 | MPMX49_04381 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.27 | MPMX49_02868 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.27 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.27 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 109 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | 0.28 | PS417_19225 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | low | > 88 |
| Dechlorosoma suillum PS | 0.46 | Dsui_3153 | | TRAP transporter, DctM subunit | 0.24 | Dsui_2868 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein | low | > 51 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS04250 | | C4-dicarboxylate ABC transporter permease | 0.15 | HSERO_RS23825 | | hypothetical protein | low | > 78 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_04347 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.48 | MPMX20_03259 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | low | > 85 |
| Variovorax sp. SCN45 | 0.33 | GFF6470 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.14 | GFF1245 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.33 | Ac3H11_163 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.15 | Ac3H11_579 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | low | > 79 |
| Pantoea sp. MT58 | 0.33 | IAI47_03220 | | TRAP transporter large permease | 0.45 | IAI47_06175 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.33 | PagCFBP13505_RS16475 | | TRAP transporter large permease | 0.45 | PagCFBP13505_RS00130 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 74 |
| Pseudomonas orientalis W4I3 | 0.32 | QF045_RS19040 | | TRAP transporter large permease | 0.28 | QF045_RS21225 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 93 |
| Rahnella sp. WP5 | 0.32 | EX31_RS08020 | | TRAP transporter large permease | 0.50 | EX31_RS19660 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.32 | HER17_RS19685 | | TRAP transporter large permease | 0.49 | HER17_RS06960 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.29 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.29 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | low | > 86 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS19635 | | TRAP transporter large permease | 0.15 | ABID97_RS15455 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 91 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_23045 | | hypothetical protein | 0.28 | AO356_03570 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.28 | Pf6N2E2_2541 | | 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC | low | > 103 |
| Pseudomonas sp. BP01 | 0.31 | JOY50_RS02045 | | TRAP transporter large permease | 0.29 | JOY50_RS16225 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.31 | GEMAOFIL_03770 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.28 | GEMAOFIL_02096 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | — | — |
| Pseudomonas putida KT2440 | 0.30 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | 0.28 | PP_1751 | | methyltransferase/FAD-dependent oxidoreductase | low | > 96 |
| Alteromonas macleodii MIT1002 | 0.29 | MIT1002_02428 | | Neu5Ac permease | 0.30 | MIT1002_02542 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.32 | 49 |
| Ralstonia sp. UNC404CL21Col | 0.24 | ABZR87_RS21100 | | TRAP transporter large permease | 0.23 | ABZR87_RS12805 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.23 | BPHYT_RS24185 | | C4-dicarboxylate ABC transporter permease | 0.23 | BPHYT_RS19575 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.23 | ABIE53_006500 | | tripartite ATP-independent transporter DctM subunit | 0.24 | ABIE53_000291 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.23 | H281DRAFT_05326 | | TRAP transporter, DctM subunit | 0.24 | H281DRAFT_02360 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | 0.32 | 88 |
Not shown: 12 genomes with orthologs for CSW01_09640 only; 43 genomes with orthologs for CSW01_10535 only