| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_17100 | | LysR family transcriptional regulator | 1.0 | CSW01_10260 | | thiol:disulfide interchange protein DsbE | 0.62 | 16 |
| Klebsiella pneumoniae MKP103 | 0.49 | KDGMDA_05655 | | DNA-binding transcriptional regulator YhaJ | 0.65 | KDGMDA_23840 | | DsbE family thiol:disulfide interchange protein | low | > 95 |
| Escherichia coli BW25113 | 0.49 | b3105 | yhaJ | predicted DNA-binding transcriptional regulator (NCBI) | 0.69 | b2195 | ccmG | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.49 | JDDGAC_22085 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.69 | JDDGAC_27270 | dsbE | thiol:disulfide interchange protein DsbE | low | > 87 |
| Escherichia coli ECRC102 | 0.49 | NIAGMN_16215 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.69 | NIAGMN_21075 | dsbE | thiol:disulfide interchange protein DsbE | low | > 80 |
| Escherichia coli ECRC62 | 0.49 | BNILDI_01295 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.69 | BNILDI_13805 | dsbE | thiol:disulfide interchange protein DsbE | low | > 75 |
| Escherichia coli ECOR27 | 0.49 | NOLOHH_10230 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.69 | NOLOHH_14885 | dsbE | thiol:disulfide interchange protein DsbE | low | > 76 |
| Escherichia fergusonii Becca | 0.49 | EFB2_00708 | | HTH-type transcriptional regulator YhaJ | 0.69 | EFB2_01661 | | Thiol:disulfide interchange protein DsbE | low | > 86 |
| Escherichia coli ECRC101 | 0.49 | MCAODC_08965 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.69 | MCAODC_14360 | dsbE | thiol:disulfide interchange protein DsbE | low | > 87 |
| Escherichia coli BL21 | 0.49 | ECD_02974 | | LysR family putative transcriptional regulator | 0.69 | ECD_02122 | | periplasmic thioredoxin of cytochrome c-type biogenesis | low | > 61 |
| Escherichia coli Nissle 1917 | 0.49 | ECOLIN_RS17890 | | DNA-binding transcriptional regulator YhaJ | 0.69 | ECOLIN_RS12830 | | thiol:disulfide interchange protein DsbE | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.49 | OHPLBJKB_00593 | | HTH-type transcriptional regulator YhaJ | 0.69 | OHPLBJKB_01516 | | Thiol:disulfide interchange protein DsbE | low | > 74 |
| Escherichia coli ECRC100 | 0.49 | OKFHMN_18450 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.69 | OKFHMN_23310 | dsbE | thiol:disulfide interchange protein DsbE | low | > 79 |
| Erwinia amylovora T8 | 0.49 | OLJFJH_02260 | | LysR family transcriptional regulator | 0.63 | OLJFJH_11105 | | DsbE family thiol:disulfide interchange protein | low | > 58 |
| Escherichia coli ECOR38 | 0.49 | HEPCGN_17285 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.68 | HEPCGN_22575 | dsbE | thiol:disulfide interchange protein DsbE | low | > 88 |
| Escherichia coli ECRC99 | 0.49 | KEDOAH_09695 | yhaJ | DNA-binding transcriptional regulator YhaJ | 0.69 | KEDOAH_04875 | dsbE | thiol:disulfide interchange protein DsbE | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF3201 | | LysR-family transcriptional regulator YhaJ | 0.61 | GFF4876 | | Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase | — | — |
| Rahnella sp. WP5 | 0.48 | EX31_RS12620 | | LysR family transcriptional regulator | 0.62 | EX31_RS19740 | | DsbE family thiol:disulfide interchange protein | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS18770 | | LysR family transcriptional regulator | 0.63 | HER17_RS09060 | | DsbE family thiol:disulfide interchange protein | low | > 75 |
| Pantoea sp. MT58 | 0.48 | IAI47_02820 | | LysR family transcriptional regulator | 0.67 | IAI47_06095 | | DsbE family thiol:disulfide interchange protein | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.48 | PagCFBP13505_RS11420 | | LysR family transcriptional regulator | 0.66 | PagCFBP13505_RS00050 | | DsbE family thiol:disulfide interchange protein | low | > 74 |
| Serratia liquefaciens MT49 | 0.46 | IAI46_22280 | | LysR family transcriptional regulator | 0.65 | IAI46_18080 | | DsbE family thiol:disulfide interchange protein | low | > 87 |
| Ralstonia solanacearum GMI1000 | 0.35 | RS_RS11085 | | LysR family transcriptional regulator | 0.16 | RS_RS13925 | | alkyl hydroperoxide reductase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.33 | ABIE53_006117 | | DNA-binding transcriptional LysR family regulator | 0.16 | ABIE53_003565 | | thiol-disulfide isomerase/thioredoxin | low | > 113 |
| Marinobacter adhaerens HP15 | 0.32 | HP15_502 | | transcriptional regulator, LysR family protein | 0.49 | HP15_2280 | | periplasmic protein thiol: disulfide oxidoreductase DsbE | — | — |
| Dechlorosoma suillum PS | 0.32 | Dsui_1258 | | transcriptional regulator | 0.34 | Dsui_1173 | | thiol-disulfide isomerase-like thioredoxin | — | — |
| Shewanella oneidensis MR-1 | 0.29 | SO3318 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.46 | SO0267 | dsbE | thiol:disulfide interchange protein DsbE (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.28 | Sama_1388 | | LysR family transcriptional regulator (RefSeq) | 0.47 | Sama_0249 | | thiol:disulfide interchange protein DsbE (RefSeq) | low | > 62 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.26 | GFF5181 | | LysR-family transcriptional regulator | 0.15 | GFF5187 | | Thiol:disulfide oxidoreductase TlpA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.20 | Pf1N1B4_548 | | Transcriptional regulator, LysR family | 0.40 | Pf1N1B4_3645 | | Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.20 | AO353_18280 | | LysR family transcriptional regulator | 0.41 | AO353_18880 | | thiol:disulfide interchange protein | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.19 | AO356_04235 | | LysR family transcriptional regulator | 0.41 | AO356_03630 | | thiol:disulfide interchange protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.19 | Pf6N2E2_2682 | | Transcriptional regulator, LysR family | 0.41 | Pf6N2E2_2554 | | Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_4458 | | Transcriptional regulator, LysR family | 0.40 | PfGW456L13_4310 | | Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase | — | — |
| Pseudomonas sp. RS175 | 0.19 | PFR28_00748 | | HTH-type transcriptional regulator YhaJ | 0.38 | PFR28_00871 | | Thiol:disulfide interchange protein DsbE | — | — |
| Pseudomonas sp. DMC3 | 0.19 | GFF2350 | | HTH-type transcriptional regulator YhaJ | 0.40 | GFF2491 | | Thiol:disulfide interchange protein DsbE | — | — |
| Pseudomonas putida KT2440 | 0.19 | PP_4539 | | Transcriptional regulator, LysR family | 0.48 | PP_4321 | | holocytochrome c synthetase subunit | — | — |
| Pseudomonas sp. BP01 | 0.19 | JOY50_RS01260 | | LysR family transcriptional regulator | 0.47 | JOY50_RS00475 | | DsbE family thiol:disulfide interchange protein | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.19 | DY961_RS00790 | | LysR family transcriptional regulator | 0.49 | DY961_RS05505 | dsbE;inference=COORDINATES | thiol:disulfide interchange protein DsbE | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.19 | DQ20_RS40250 | | LysR family transcriptional regulator | 0.48 | DQ20_RS47285 | dsbE;inference=COORDINATES | thiol:disulfide interchange protein DsbE | — | — |
| Pseudomonas aeruginosa PA14 | 0.19 | IKLFDK_16420 | | LysR family transcriptional regulator | 0.49 | IKLFDK_07045 | | thiol:disulfide interchange protein DsbE | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.18 | Psyr_3825 | | transcriptional regulator, LysR family | 0.42 | Psyr_3387 | | Periplasmic protein thiol:disulfide oxidoreductase DsbE | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.18 | Psyr_3825 | | transcriptional regulator, LysR family | 0.42 | Psyr_3387 | | Periplasmic protein thiol:disulfide oxidoreductase DsbE | — | — |
| Pseudomonas sp. SVBP6 | 0.18 | COO64_RS21955 | | LysR family transcriptional regulator | 0.48 | COO64_RS25720 | | DsbE family thiol:disulfide interchange protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.18 | TX73_022195 | | LysR family transcriptional regulator | 0.28 | TX73_001070 | | DsbE family thiol:disulfide interchange protein | — | — |
| Pseudomonas sp. S08-1 | 0.17 | OH686_05450 | | Transcriptional regulator, LysR family | 0.42 | OH686_02630 | | Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase | — | — |
| Pseudomonas segetis P6 | 0.17 | MPMX49_03254 | | HTH-type transcriptional regulator YhaJ | 0.43 | MPMX49_03106 | | Thiol:disulfide interchange protein DsbE | — | — |
| Pseudomonas stutzeri RCH2 | 0.17 | Psest_1624 | | Transcriptional regulator | 0.45 | Psest_1760 | | periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | — | — |
| Alteromonas macleodii MIT1002 | 0.16 | MIT1002_02374 | | HTH-type transcriptional activator AllS | 0.36 | MIT1002_00966 | | Cytochrome c biogenesis protein CcmG | — | — |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS08235 | | LysR family transcriptional regulator | 0.30 | ABIE40_RS18300 | | DsbE family thiol:disulfide interchange protein | low | > 107 |
| Rhodanobacter denitrificans MT42 | 0.13 | LRK55_RS14075 | | LysR family transcriptional regulator | 0.37 | LRK55_RS15810 | | DsbE family thiol:disulfide interchange protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.13 | LRK54_RS14355 | | LysR family transcriptional regulator | 0.37 | LRK54_RS16060 | | DsbE family thiol:disulfide interchange protein | — | — |
Not shown: 22 genomes with orthologs for CSW01_17100 only; 27 genomes with orthologs for CSW01_10260 only