Conservation of cofitness between CSW01_01710 and CSW01_09900 in Vibrio cholerae E7946 ATCC 55056

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01710 Rsd/AlgQ family anti-sigma factor 1.0 CSW01_09900 ribonuclease D 0.60 8
Shewanella oneidensis MR-1 0.39 SO0433 rsd regulator of sigma D (NCBI ptt file) 0.32 SO2580 rnd ribonuclease D (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.38 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) 0.32 Shewana3_2385 ribonuclease D (RefSeq) low > 73
Shewanella amazonensis SB2B 0.37 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) 0.33 Sama_1933 ribonuclease D (RefSeq) low > 62
Shewanella loihica PV-4 0.36 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) 0.35 Shew_2187 ribonuclease D (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.32 MIT1002_03798 Regulator of sigma D 0.38 MIT1002_02587 Ribonuclease D low > 70
Serratia liquefaciens MT49 0.32 IAI46_01325 Rsd/AlgQ family anti-sigma factor 0.47 IAI46_14530 ribonuclease D low > 87
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS22615 Rsd/AlgQ family anti-sigma factor 0.42 PagCFBP13505_RS02675 ribonuclease D low > 74
Pantoea sp. MT58 0.31 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.42 IAI47_08840 ribonuclease D low > 76
Marinobacter adhaerens HP15 0.30 HP15_221 anti-RNA polymerase sigma 70 factor 0.22 HP15_1882 ribonuclease D low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4197 Regulator of sigma D 0.43 GFF2819 Ribonuclease D (EC 3.1.26.3) low > 78
Escherichia coli ECRC62 0.29 BNILDI_06010 rsd sigma D regulator 0.43 BNILDI_15910 rnd ribonuclease D low > 75
Escherichia coli BL21 0.29 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.44 ECD_01774 ribonuclease D low > 61
Escherichia coli ECRC99 0.29 KEDOAH_14790 rsd sigma D regulator 0.43 KEDOAH_01505 rnd ribonuclease D — —
Escherichia coli ECRC100 0.29 OKFHMN_13370 rsd sigma D regulator 0.43 OKFHMN_26605 rnd ribonuclease D low > 79
Escherichia coli ECRC101 0.29 MCAODC_03870 rsd sigma D regulator 0.43 MCAODC_18805 rnd ribonuclease D low > 87
Escherichia coli ECRC102 0.29 NIAGMN_11120 rsd sigma D regulator 0.43 NIAGMN_01460 rnd ribonuclease D low > 80
Escherichia coli ECOR27 0.29 NOLOHH_05515 rsd sigma D regulator 0.43 NOLOHH_17125 rnd ribonuclease D low > 76
Escherichia coli ECRC98 0.29 JDDGAC_16995 rsd sigma D regulator 0.43 JDDGAC_01180 rnd ribonuclease D low > 87
Escherichia coli BW25113 0.29 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.44 b1804 rnd ribonuclease D (NCBI) 0.22 43
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04055 Regulator of sigma D 0.43 OHPLBJKB_01929 Ribonuclease D low > 74
Escherichia coli ECOR38 0.29 HEPCGN_12005 rsd sigma D regulator 0.43 HEPCGN_04995 rnd ribonuclease D 0.58 15
Enterobacter sp. TBS_079 0.29 MPMX20_00218 Regulator of sigma D 0.46 MPMX20_02710 Ribonuclease D low > 85
Klebsiella pneumoniae MKP103 0.29 KDGMDA_10045 sigma D regulator 0.41 KDGMDA_25110 ribonuclease D low > 95
Rahnella sp. WP5 0.29 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.46 EX31_RS10595 ribonuclease D low > 89
Escherichia fergusonii Becca 0.29 EFB2_04616 Regulator of sigma D 0.43 EFB2_02196 Ribonuclease D low > 86
Escherichia coli Nissle 1917 0.29 ECOLIN_RS23045 sigma D regulator 0.43 ECOLIN_RS10035 ribonuclease D — —
Klebsiella michiganensis M5al 0.28 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor 0.44 BWI76_RS17795 ribonuclease D low > 92
Enterobacter asburiae PDN3 0.27 EX28DRAFT_4537 Regulator of sigma D 0.46 EX28DRAFT_0755 ribonuclease D low > 76
Pectobacterium carotovorum WPP14 0.27 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.46 HER17_RS11270 ribonuclease D 0.85 3
Pseudomonas segetis P6 0.27 MPMX49_04516 Regulator of sigma D 0.27 MPMX49_01838 Ribonuclease D low > 75
Pseudomonas aeruginosa PA14 0.26 IKLFDK_27180 Alginate regulatory protein AlgQ 0.27 IKLFDK_06140 ribonuclease D low > 98
Pseudomonas aeruginosa PUPa3 0.26 DQ20_RS49965 rsd;go_process=regulation sigma D regulator 0.27 DQ20_RS52945 rnd;go_function=RNA ribonuclease D low > 101
Pseudomonas aeruginosa MRSN321 0.26 DY961_RS12155 rsd;go_process=regulation sigma D regulator 0.27 DY961_RS18805 rnd;go_function=RNA ribonuclease D low > 100
Pseudomonas sp. S08-1 0.26 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD 0.29 OH686_05315 ribonuclease D 0.75 76
Erwinia tracheiphila SCR3 0.25 LU632_RS00975 Rsd/AlgQ family anti-sigma factor 0.40 LU632_RS13130 rnd ribonuclease D low > 73
Erwinia tracheiphila HP pepo 2.2 0.25 IJEDHG_10890 rsd sigma D regulator 0.40 IJEDHG_22465 rnd ribonuclease D low > 61
Pseudomonas stutzeri RCH2 0.25 Psest_3743 Regulator of sigma D 0.28 Psest_2995 ribonuclease D — —
Pseudomonas sp. DMC3 0.25 GFF353 Regulator of sigma D 0.27 GFF2311 Ribonuclease D low > 89
Erwinia amylovora T8 0.25 OLJFJH_06745 sigma D regulator 0.43 OLJFJH_13105 ribonuclease D low > 58
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 0.26 Psyr_1563 Ribonuclease D low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 0.26 Psyr_1563 Ribonuclease D low > 86
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4435 Regulator of sigma D 0.27 Pf6N2E2_2727 Ribonuclease D (EC 3.1.26.3) 0.26 45
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_12810 transcriptional regulator 0.27 AO356_04420 ribonuclease D low > 104
Pseudomonas sp. RS175 0.23 PFR28_04361 Regulator of sigma D 0.28 PFR28_00712 Ribonuclease D low > 88
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_861 Regulator of sigma D 0.27 PfGW456L13_4496 Ribonuclease D (EC 3.1.26.3) low > 87
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_08965 transcriptional regulator 0.27 AO353_17855 ribonuclease D low > 101
Pseudomonas sp. BP01 0.22 JOY50_RS18725 Rsd/AlgQ family anti-sigma factor 0.28 JOY50_RS01555 rnd ribonuclease D low > 84
Pseudomonas putida KT2440 0.22 PP_0191 Transcriptional regulatory protein AlgQ 0.29 PP_4591 Ribonuclease D low > 96
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_2190 Regulator of sigma D 0.27 Pf1N1B4_3345 Ribonuclease D (EC 3.1.26.3) low > 87
Pseudomonas orientalis W4I3 0.21 QF045_RS01865 sigma D regulator 0.26 QF045_RS10030 ribonuclease D low > 93
Dickeya dianthicola ME23 0.21 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.45 DZA65_RS11600 ribonuclease D low > 75
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.27 PFLU_RS07465 ribonuclease D low > 109
Pseudomonas simiae WCS417 0.21 PS417_27505 transcriptional regulator 0.27 PS417_07375 ribonuclease D low > 88
Pseudomonas lactucae CFBP13502 0.21 GEMAOFIL_05639 Regulator of sigma D 0.27 GEMAOFIL_01609 Ribonuclease D low > 96
Pseudomonas fluorescens SBW25 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.27 PFLU_RS07465 ribonuclease D low > 109
Pseudomonas sp. SVBP6 0.20 COO64_RS01170 Rsd/AlgQ family anti-sigma factor 0.27 COO64_RS26150 rnd ribonuclease D low > 93
Dickeya dianthicola 67-19 0.20 HGI48_RS01175 sigma D regulator 0.46 HGI48_RS11255 ribonuclease D 0.73 1
Dickeya dadantii 3937 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.46 DDA3937_RS11220 ribonuclease D low > 74

Not shown: 0 genomes with orthologs for CSW01_01710 only; 24 genomes with orthologs for CSW01_09900 only