| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 1.0 | CSW01_08445 | | ABC transporter substrate-binding protein | 0.87 | 20 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.86 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.38 | GFF2688 | | Peptide transport periplasmic protein SapA | low | > 78 |
| Enterobacter sp. TBS_079 | 0.86 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.40 | MPMX20_02474 | | Peptide transport periplasmic protein SapA | low | > 85 |
| Enterobacter asburiae PDN3 | 0.86 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.41 | EX28DRAFT_0974 | | ABC-type oligopeptide transport system, periplasmic component | — | — |
| Escherichia coli ECRC98 | 0.86 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.39 | JDDGAC_05005 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.86 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.39 | OHPLBJKB_02388 | | Peptide transport periplasmic protein SapA | low | > 73 |
| Escherichia coli ECRC100 | 0.86 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.39 | OKFHMN_02460 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.38 | LU632_RS11570 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Rahnella sp. WP5 | 0.86 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.41 | EX31_RS15700 | | peptide ABC transporter substrate-binding protein SapA | — | — |
| Serratia liquefaciens MT49 | 0.86 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.40 | IAI46_13525 | | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECRC102 | 0.86 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.39 | NIAGMN_26630 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Erwinia amylovora T8 | 0.86 | OLJFJH_00765 | | RNA polymerase-binding protein DksA | 0.39 | OLJFJH_13660 | | peptide ABC transporter substrate-binding protein SapA | — | — |
| Dickeya dadantii 3937 | 0.86 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.39 | DDA3937_RS12440 | | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECRC62 | 0.86 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.39 | BNILDI_18295 | sapA | peptide ABC transporter substrate-binding protein SapA | low | > 75 |
| Escherichia coli BL21 | 0.86 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.39 | ECD_01271 | | antimicrobial peptide transport ABC transporter periplasmic binding protein | — | — |
| Escherichia coli Nissle 1917 | 0.86 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.39 | ECOLIN_RS07825 | | ABC transporter substrate-binding protein SapA | — | — |
| Escherichia fergusonii Becca | 0.86 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.39 | EFB2_02626 | | Peptide transport periplasmic protein SapA | low | > 86 |
| Escherichia coli ECOR27 | 0.86 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.39 | NOLOHH_20145 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECRC101 | 0.86 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.39 | MCAODC_15810 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECRC99 | 0.86 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.39 | KEDOAH_26315 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli ECOR38 | 0.86 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.39 | HEPCGN_25740 | sapA | peptide ABC transporter substrate-binding protein SapA | — | — |
| Escherichia coli BW25113 | 0.86 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.39 | b1294 | sapA | predicted antimicrobial peptide transporter subunit (NCBI) | low | > 76 |
| Pantoea sp. MT58 | 0.85 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.40 | IAI47_09380 | | peptide ABC transporter substrate-binding protein SapA | low | > 76 |
| Dickeya dianthicola 67-19 | 0.85 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.39 | HGI48_RS12505 | | peptide ABC transporter substrate-binding protein SapA | low | > 71 |
| Dickeya dianthicola ME23 | 0.85 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.39 | DZA65_RS12955 | | peptide ABC transporter substrate-binding protein SapA | — | — |
| Klebsiella michiganensis M5al | 0.84 | BWI76_RS05015 | | transcriptional regulator | 0.40 | BWI76_RS12420 | | peptide ABC transporter substrate-binding protein SapA | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.83 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.40 | HER17_RS09495 | | peptide ABC transporter substrate-binding protein SapA | low | > 75 |
| Shewanella loihica PV-4 | 0.83 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.37 | Shew_2498 | | extracellular solute-binding protein (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.83 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.36 | SO1805 | sapA | peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) | — | — |
| Shewanella amazonensis SB2B | 0.82 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.36 | Sama_1235 | | peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.82 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.37 | Shewana3_2650 | | acetate kinase (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.72 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | 0.32 | B158DRAFT_1047 | | ABC-type dipeptide transport system, periplasmic component | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_03690 | | DnaK suppressor protein | 0.35 | MIT1002_01141 | | Dipeptide-binding protein | low | > 70 |
| Pseudomonas sp. S08-1 | 0.70 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.31 | OH686_08695 | | Dipeptide ABC transporter, substrate-binding protein DppA | — | — |
| Pseudomonas aeruginosa PA14 | 0.70 | IKLFDK_30000 | | RNA polymerase-binding protein DksA | 0.31 | IKLFDK_01580 | | Di/tripeptide-binding protein 3 | low | > 101 |
| Pseudomonas simiae WCS417 | 0.69 | PS417_23875 | | molecular chaperone DnaK | 0.30 | PS417_04075 | | peptide ABC transporter substrate-binding protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.68 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.32 | Pf1N1B4_1121 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | — | — |
| Pseudomonas sp. DMC3 | 0.68 | GFF4034 | | RNA polymerase-binding transcription factor DksA | 0.32 | GFF5023 | | Periplasmic dipeptide transport protein | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_16095 | | molecular chaperone DnaK | 0.31 | AO356_07255 | | peptide ABC transporter substrate-binding protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.68 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.32 | PFR28_00128 | | Periplasmic dipeptide transport protein | low | > 88 |
| Pseudomonas sp. BP01 | 0.68 | JOY50_RS27695 | dksA | RNA polymerase-binding protein DksA | 0.30 | JOY50_RS10980 | | ABC transporter substrate-binding protein | low | > 84 |
| Pseudomonas fluorescens FW300-N2E3 | 0.68 | AO353_14420 | | molecular chaperone DnaK | 0.30 | AO353_05370 | | peptide ABC transporter substrate-binding protein | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.32 | Psyr_4238 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.32 | Psyr_4238 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.30 | PFLU_RS04120 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.30 | PFLU_RS04120 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.31 | PfGW456L13_5054 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.67 | COO64_RS15070 | dksA | RNA polymerase-binding protein DksA | 0.31 | COO64_RS04105 | | ABC transporter substrate-binding protein | low | > 93 |
| Pseudomonas putida KT2440 | 0.64 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 0.30 | PP_0885 | | dipeptide ABC transporter - periplasmic binding protein | low | > 96 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | 0.32 | ABIE40_RS22525 | | ABC transporter substrate-binding protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.35 | SMc00469 | | DnaK suppressor protein | 0.32 | SMc00786 | | periplasmic dipeptide-binding protein | — | — |
| Agrobacterium fabrum C58 | 0.35 | Atu1359 | | dnaK deletion suppressor protein | 0.30 | Atu4113 | | dipeptide ABC transporter substrate-binding protein | low | > 89 |
| Bosea sp. OAE506 | 0.31 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.12 | ABIE41_RS23730 | | ABC transporter substrate-binding protein | low | > 77 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.13 | ABCV34_RS13515 | | glutathione ABC transporter substrate-binding protein GsiB | — | — |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_020255 | | RNA polymerase-binding protein DksA | 0.11 | TX73_012035 | | ABC transporter substrate-binding protein | low | > 86 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | 0.30 | Rru_A2356 | | extracellular solute-binding protein, family 5 (NCBI) | low | > 58 |
Not shown: 11 genomes with orthologs for CSW01_03155 only; 14 genomes with orthologs for CSW01_08445 only