Conservation of cofitness between CSW01_00785 and CSW01_03930 in Vibrio cholerae E7946 ATCC 55056

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA 1.0 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.49 6
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS18390 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 PagCFBP13505_RS14930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Pantoea sp. MT58 0.68 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 76
Erwinia tracheiphila SCR3 0.67 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 73
Erwinia tracheiphila HP pepo 2.2 0.67 IJEDHG_13145 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 IJEDHG_02785 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 61
Shewanella loihica PV-4 0.67 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) 0.71 Shew_1287 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.67 Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) 0.69 Sama_2368 hypothetical protein (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.67 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 71
Serratia liquefaciens MT49 0.65 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Erwinia amylovora T8 0.65 OLJFJH_06160 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.73 OLJFJH_10435 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.64 31
Enterobacter sp. TBS_079 0.65 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.74 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN low > 85
Escherichia coli Nissle 1917 0.65 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 55
Escherichia fergusonii Becca 0.65 EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.74 EFB2_01373 Dual-specificity RNA methyltransferase RlmN low > 86
Escherichia coli ECRC98 0.65 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Escherichia coli ECRC102 0.65 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 80
Escherichia coli ECRC100 0.65 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 79
Escherichia coli ECRC99 0.65 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN — —
Shewanella sp. ANA-3 0.65 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) 0.71 Shewana3_1226 hypothetical protein (RefSeq) low > 73
Klebsiella michiganensis M5al 0.65 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 92
Klebsiella pneumoniae MKP103 0.65 KDGMDA_09400 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 KDGMDA_28215 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 95
Escherichia coli BL21 0.65 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase 0.74 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR27 0.65 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 76
Escherichia coli BW25113 0.65 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) 0.74 b2517 yfgB predicted enzyme (NCBI) low > 76
Escherichia coli ECRC62 0.65 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.74 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN low > 74
Rahnella sp. WP5 0.65 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.72 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 89
Escherichia coli ECOR38 0.65 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 88
Shewanella oneidensis MR-1 0.65 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) 0.71 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.65 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.74 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) 0.74 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 78
Enterobacter asburiae PDN3 0.64 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase 0.74 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 76
Alteromonas macleodii MIT1002 0.61 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase 0.69 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN low > 70
Acinetobacter baumannii LAC-4 0.58 RR41_RS11900 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.50 RR41_RS16460 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 55
Acinetobacter radioresistens SK82 0.57 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.50 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN 0.50 31
Pseudomonas segetis P6 0.51 MPMX49_03997 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.54 MPMX49_01515 Dual-specificity RNA methyltransferase RlmN low > 75
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_13905 tRNA (uracil-5-)-methyltransferase 0.55 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase low > 101
Pseudomonas fluorescens SBW25 0.50 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas stutzeri RCH2 0.50 Psest_3451 tRNA (uracil-5-)-methyltransferase 0.54 Psest_1259 23S rRNA m2A2503 methyltransferase low > 67
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) 0.55 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Pseudomonas simiae WCS417 0.49 PS417_24385 tRNA (uracil-5-)-methyltransferase 0.55 PS417_23160 50S rRNA methyltransferase low > 88
Pseudomonas orientalis W4I3 0.49 QF045_RS26680 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.55 QF045_RS25380 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 93
Pseudomonas sp. RS175 0.49 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.54 PFR28_00294 Dual-specificity RNA methyltransferase RlmN low > 88
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_15600 tRNA (uracil-5-)-methyltransferase 0.55 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase low > 104
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) 0.54 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 87
Pseudomonas sp. SVBP6 0.49 COO64_RS02860 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.55 COO64_RS03935 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 93
Pseudomonas lactucae CFBP13502 0.49 GEMAOFIL_05030 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.55 GEMAOFIL_04784 Dual-specificity RNA methyltransferase RlmN low > 96
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) 0.54 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Dechlorosoma suillum PS 0.48 Dsui_2239 tRNA (uracil-5-)-methyltransferase 0.51 Dsui_3145 23S rRNA m2A2503 methyltransferase — —
Pseudomonas sp. DMC3 0.48 GFF3938 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.54 GFF4342 Dual-specificity RNA methyltransferase RlmN low > 89
Pseudomonas sp. S08-1 0.48 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase 0.53 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 80
Pseudomonas putida KT2440 0.48 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase 0.54 PP_0850 Dual-specificity RNA methyltransferase RlmN low > 96
Pseudomonas sp. BP01 0.48 JOY50_RS27500 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.53 JOY50_RS22780 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 84
Pseudomonas aeruginosa PUPa3 0.47 DQ20_RS52695 trmA;go_function=tRNA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.54 DQ20_RS43210 rlmN;go_function=S-adenosylmethionine-dependent 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 101
Pseudomonas aeruginosa MRSN321 0.47 DY961_RS09335 trmA;go_function=S-adenosylmethionine-dependent tRNA (uridine(54)-C5)-methyltransferase TrmA 0.54 DY961_RS13890 rlmN;go_function=S-adenosylmethionine-dependent 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 100
Pseudomonas aeruginosa PA14 0.47 IKLFDK_30015 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.54 IKLFDK_19600 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 98
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86

Not shown: 0 genomes with orthologs for CSW01_00785 only; 60 genomes with orthologs for CSW01_03930 only