Conservation of cofitness between CSW01_03340 and CSW01_03555 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03340 ribosomal RNA large subunit methyltransferase E 1.0 CSW01_03555 transcriptional regulator 0.43 20
Shewanella amazonensis SB2B 0.77 Sama_0953 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.57 Sama_0920 transcriptional regulator HlyU (RefSeq) low > 62
Shewanella loihica PV-4 0.77 Shew_2835 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.56 Shew_1095 ArsR family transcriptional regulator (RefSeq) — —
Shewanella sp. ANA-3 0.77 Shewana3_1022 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.57 Shewana3_3141 ArsR family transcriptional regulator (RefSeq) — —
Shewanella oneidensis MR-1 0.76 SO1196 rrmJ ribosomal RNA large subunit methyltransferase J (NCBI ptt file) 0.57 SO3538 hlyU transcriptional regulator HlyU (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.74 MIT1002_01864 Ribosomal RNA large subunit methyltransferase E 0.36 MIT1002_02372 Biofilm growth-associated repressor low > 70
Enterobacter sp. TBS_079 0.72 MPMX20_04083 Ribosomal RNA large subunit methyltransferase E 0.37 MPMX20_03547 putative HTH-type transcriptional regulator YgaV — —
Pantoea sp. MT58 0.72 IAI47_17070 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.32 IAI47_19710 helix-turn-helix transcriptional regulator — —
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3230 cell division protein FtsJ 0.36 EX28DRAFT_2752 Predicted transcriptional regulators — —
Klebsiella pneumoniae MKP103 0.71 KDGMDA_05965 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.36 KDGMDA_02660 transcriptional regulator — —
Klebsiella michiganensis M5al 0.71 BWI76_RS25145 23S rRNA (uridine(2552)-2'-O)-methyltransferase 0.34 BWI76_RS21995 transcriptional regulator — —
Rahnella sp. WP5 0.71 EX31_RS08585 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.28 EX31_RS21725 helix-turn-helix transcriptional regulator — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS18320 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.36 HER17_RS03345 metalloregulator ArsR/SmtB family transcription factor — —
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_0634 23S rRNA Um-2552 2'-O-methyltransferase (EC 2.1.1.166) 0.52 B158DRAFT_0345 transcriptional regulator, ArsR family — —
Pseudomonas simiae WCS417 0.59 PS417_24020 23S rRNA methyltransferase 0.37 PS417_17530 ArsR family transcriptional regulator — —
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_04954 Ribosomal RNA large subunit methyltransferase E 0.38 GEMAOFIL_03800 Biofilm growth-associated repressor — —
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_05610 23S rRNA methyltransferase 0.38 AO353_26620 ArsR family transcriptional regulator — —
Pseudomonas orientalis W4I3 0.59 QF045_RS26275 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.37 QF045_RS19080 metalloregulator ArsR/SmtB family transcription factor — —
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_5095 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.38 PfGW456L13_3537 Transcriptional regulator, ArsR family — —
Rhodanobacter sp000427505 FW510-R12 0.57 LRK53_RS12240 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.43 LRK53_RS00775 metalloregulator ArsR/SmtB family transcription factor — —
Rhodanobacter denitrificans MT42 0.56 LRK55_RS16405 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.43 LRK55_RS07465 metalloregulator ArsR/SmtB family transcription factor low > 63
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS16680 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.43 LRK54_RS07735 metalloregulator ArsR/SmtB family transcription factor — —
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_1168 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.37 Pf1N1B4_4483 Transcriptional regulator, ArsR family — —
Pseudomonas sp. DMC3 0.56 GFF4981 Ribosomal RNA large subunit methyltransferase E 0.38 GFF1611 Biofilm growth-associated repressor — —
Pseudomonas stutzeri RCH2 0.56 Psest_1346 23S rRNA methylase 0.40 Psest_1782 Predicted transcriptional regulators — —
Variovorax sp. SCN45 0.45 GFF370 23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166) 0.36 GFF6927 Transcriptional regulator, ArsR family low > 127
Castellaniella sp019104865 MT123 0.44 ABCV34_RS15550 RlmE family RNA methyltransferase 0.38 ABCV34_RS01430 metalloregulator ArsR/SmtB family transcription factor — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_04407 23S rRNA Um-2552 2'-O-methyltransferase 0.37 H281DRAFT_02691 transcriptional regulator, ArsR family — —
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS13490 ribosomal RNA large subunit methyltransferase E 0.38 RR42_RS35445 ArsR family transcriptional regulator — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS16115 23S rRNA methyltransferase 0.49 AZOBR_RS20775 ArsR family transcriptional regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF4216 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.38 GFF3245 Transcriptional regulator, ArsR family low > 90
Magnetospirillum magneticum AMB-1 0.39 AMB_RS19140 23S rRNA methyltransferase 0.51 AMB_RS14620 ArsR family transcriptional regulator — —
Agrobacterium fabrum C58 0.38 Atu0620 cell division protein 0.45 Atu2278 transcriptional regulator, ArsR family — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2482 23S rRNA methylase 0.42 Ga0059261_0944 Predicted transcriptional regulators — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS03015 RlmE family RNA methyltransferase 0.42 A4249_RS00235 metalloregulator ArsR/SmtB family transcription factor — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c16080 ribosomal RNA large subunit methyltransferase J 0.35 PGA1_c12380 regulatory protein SoxR — —
Dinoroseobacter shibae DFL-12 0.31 Dshi_1672 ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq) 0.36 Dshi_2812 transcriptional regulator, ArsR family (RefSeq) — —

Not shown: 68 genomes with orthologs for CSW01_03340 only; 1 genomes with orthologs for CSW01_03555 only