Conservation of cofitness between CSW01_04585 and CSW01_01830 in Vibrio cholerae E7946 ATCC 55056

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04585 tRNA 4-thiouridine(8) synthase ThiI 1.0 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.78 4
Dickeya dianthicola 67-19 0.67 HGI48_RS05605 tRNA 4-thiouridine(8) synthase ThiI 0.69 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 71
Dickeya dadantii 3937 0.67 DDA3937_RS05545 tRNA 4-thiouridine(8) synthase ThiI 0.70 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Dickeya dianthicola ME23 0.67 DZA65_RS05930 tRNA 4-thiouridine(8) synthase ThiI 0.69 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Pectobacterium carotovorum WPP14 0.66 HER17_RS15920 tRNA 4-thiouridine(8) synthase ThiI 0.71 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Rahnella sp. WP5 0.66 EX31_RS22170 tRNA 4-thiouridine(8) synthase ThiI 0.70 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 89
Serratia liquefaciens MT49 0.66 IAI46_04940 tRNA 4-thiouridine(8) synthase ThiI 0.70 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF4327 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.71 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 78
Escherichia coli ECRC102 0.66 NIAGMN_06460 thiI tRNA sulfurtransferase 0.71 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC100 0.66 OKFHMN_08405 thiI tRNA sulfurtransferase 0.71 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Escherichia coli ECRC98 0.66 JDDGAC_12060 thiI tRNA sulfurtransferase 0.71 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC101 0.66 MCAODC_27630 thiI tRNA sulfurtransferase 0.71 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Escherichia coli ECRC99 0.66 KEDOAH_19560 thiI tRNA sulfurtransferase 0.71 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia fergusonii Becca 0.66 EFB2_03634 tRNA sulfurtransferase 0.71 EFB2_04364 tRNA dimethylallyltransferase low > 86
Klebsiella michiganensis M5al 0.66 BWI76_RS06395 tRNA 4-thiouridine(8) synthase ThiI 0.73 BWI76_RS02530 tRNA dimethylallyltransferase low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS18845 thiI tRNA 4-thiouridine(8) synthase ThiI 0.68 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Erwinia amylovora T8 0.65 OLJFJH_18050 tRNA sulfurtransferase 0.68 OLJFJH_02505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 56
Escherichia coli ECOR38 0.65 HEPCGN_07035 thiI tRNA sulfurtransferase 0.72 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Escherichia coli BW25113 0.65 b0423 thiI thiamine biosynthesis protein ThiI (NCBI) 0.72 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) low > 76
Escherichia coli Nissle 1917 0.65 ECOLIN_RS02550 tRNA uracil 4-sulfurtransferase ThiI 0.71 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03253 tRNA sulfurtransferase 0.72 OHPLBJKB_03871 tRNA dimethylallyltransferase — —
Escherichia coli BL21 0.65 ECD_00371 tRNA s(4)U8 sulfurtransferase 0.72 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase low > 61
Escherichia coli ECOR27 0.65 NOLOHH_01355 thiI tRNA sulfurtransferase 0.72 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Escherichia coli ECRC62 0.65 BNILDI_22770 thiI tRNA sulfurtransferase 0.72 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Enterobacter sp. TBS_079 0.64 MPMX20_01014 tRNA sulfurtransferase 0.71 MPMX20_00452 tRNA dimethylallyltransferase low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2548 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain 0.71 EX28DRAFT_3368 tRNA dimethylallyltransferase low > 76
Pantoea sp. MT58 0.64 IAI47_14725 tRNA 4-thiouridine(8) synthase ThiI 0.70 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Shewanella loihica PV-4 0.60 Shew_2766 thiamine biosynthesis protein ThiI (RefSeq) 0.63 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) low > 60
Shewanella sp. ANA-3 0.59 Shewana3_2896 thiamine biosynthesis protein ThiI (RefSeq) 0.63 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Shewanella oneidensis MR-1 0.59 SO1531 thiI thiamine biosynthesis protein ThiI (NCBI ptt file) 0.65 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.59 Sama_2431 thiamine biosynthesis protein ThiI (RefSeq) 0.62 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Pseudomonas stutzeri RCH2 0.46 Psest_3927 thiazole biosynthesis/tRNA modification protein ThiI 0.58 Psest_0682 tRNA dimethylallyltransferase — —
Pseudomonas sp. BP01 0.45 JOY50_RS09465 thiI tRNA uracil 4-sulfurtransferase ThiI 0.59 JOY50_RS17225 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Pseudomonas sp. SVBP6 0.45 COO64_RS13350 thiI tRNA uracil 4-sulfurtransferase ThiI 0.60 COO64_RS17895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Pseudomonas putida KT2440 0.45 PP_5045 tRNA sulfurtransferase 0.58 PP_4895 tRNA dimethylallyltransferase 0.30 42
Pseudomonas aeruginosa PA14 0.45 IKLFDK_27930 tRNA sulfurtransferase 0.55 IKLFDK_28815 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.80 1
Pseudomonas simiae WCS417 0.44 PS417_01660 tRNA s(4)U8 sulfurtransferase 0.60 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_4816 [ThiS-adenylate] sulfurtransferase 0.62 Psyr_0571 tRNA isopentenyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_12175 tRNA s(4)U8 sulfurtransferase 0.62 AO353_13140 tRNA dimethylallyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_4816 [ThiS-adenylate] sulfurtransferase 0.62 Psyr_0571 tRNA isopentenyltransferase — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1604 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.62 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas sp. S08-1 0.44 OH686_10615 tRNA 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis 0.57 OH686_09475 tRNA dimethylallyltransferase low > 80
Pseudomonas sp. DMC3 0.44 GFF4076 tRNA sulfurtransferase 0.64 GFF3219 tRNA dimethylallyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_3819 Thiamine biosynthesis protein thiI 0.63 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_341 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.62 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_09700 tRNA s(4)U8 sulfurtransferase 0.63 AO356_08660 tRNA dimethylallyltransferase — —
Pseudomonas sp. RS175 0.43 PFR28_04950 tRNA sulfurtransferase 0.62 PFR28_05120 tRNA dimethylallyltransferase — —
Marinobacter adhaerens HP15 0.39 HP15_3407 thiamine biosynthesis protein 0.59 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase — —

Not shown: 0 genomes with orthologs for CSW01_04585 only; 61 genomes with orthologs for CSW01_01830 only