Conservation of cofitness between CCNA_02121 and CCNA_00311 in Caulobacter crescentus NA1000 Δfur

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Caulobacter crescentus NA1000 Δfur 1.0 CCNA_02121 ATP-dependent helicase 1.0 CCNA_00311 Zn-dependent protease family protein 0.68 10
Caulobacter crescentus NA1000 1.00 CCNA_02121 ATP-dependent helicase 1.00 CCNA_00311 Zn-dependent protease family protein low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.63 A4249_RS11475 ligase-associated DNA damage response DEXH box helicase 0.64 A4249_RS09195 TldD/PmbA family protein 0.47 25
Rhizobium sp. OAE497 0.54 ABIE40_RS02475 ligase-associated DNA damage response DEXH box helicase 0.33 ABIE40_RS03780 TldD/PmbA family protein low > 107
Azospirillum brasilense Sp245 0.54 AZOBR_RS09305 helicase 0.50 AZOBR_RS11930 modulator protein low > 97
Rhodopseudomonas palustris CGA009 0.53 TX73_004160 ligase-associated DNA damage response DEXH box helicase 0.43 TX73_005930 TldD/PmbA family protein low > 86
Sinorhizobium meliloti 1021 0.53 SMc02237 DNA damage response helicase, ligase-associated (from data) 0.37 SMc00897 PMBA protein low > 103
Azospirillum sp. SherDot2 0.52 MPMX19_01581 ATP-dependent RNA helicase DbpA 0.47 MPMX19_01886 Metalloprotease PmbA low > 112
Agrobacterium fabrum C58 0.51 Atu0494 large atp-dependant helicase-related protein 0.38 Atu0693 PmbA/TldD related protein low > 89
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_1941 DNA damage response helicase, ligase-associated (from data) 0.45 Ga0059261_0810 Predicted Zn-dependent proteases and their inactivated homologs low > 68
Alteromonas macleodii MIT1002 0.43 MIT1002_03764 ATP-dependent helicase 0.29 MIT1002_00230 peptidase PmbA low > 70
Phaeobacter inhibens DSM 17395 0.42 PGA1_c06040 DNA damage response helicase, ligase-associated (from data) 0.39 PGA1_c33480 protein PmbA — —
Dinoroseobacter shibae DFL-12 0.40 Dshi_1119 DNA damage response helicase, ligase-associated (from data) 0.35 Dshi_0064 peptidase U62 modulator of DNA gyrase (RefSeq) low > 64
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS21360 ligase-associated DNA damage response DEXH box helicase 0.31 ABZR87_RS09660 metalloprotease PmbA low > 80
Variovorax sp. SCN45 0.24 GFF3698 ATP-dependent, 3'-5' DNA helicase with strand annealing activity 0.33 GFF4697 TldE protein, part of TldE/TldD proteolytic complex low > 127
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS11390 DEAD/DEAH box helicase 0.31 HSERO_RS09265 peptidase C69 low > 78
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_03145 ATP-dependent helicase Lhr and Lhr-like helicase 0.29 H281DRAFT_04304 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 low > 103
Paraburkholderia graminis OAS925 0.24 ABIE53_004154 ATP-dependent Lhr-like helicase 0.29 ABIE53_003116 PmbA protein low > 113
Pseudomonas putida KT2440 0.23 PP_1103 ATP-dependent helicase, DEAD box family 0.27 PP_0942 regulatory protease low > 96
Pseudomonas stutzeri RCH2 0.23 Psest_1647 Lhr-like helicases 0.26 Psest_3318 Predicted Zn-dependent proteases and their inactivated homologs low > 67
Pseudomonas sp. S08-1 0.23 OH686_06065 DEXH box helicase, DNA ligase-associated 0.27 OH686_08570 TldE protein, part of TldE/TldD proteolytic complex low > 80
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS06455 ligase-associated DNA damage response DEXH box helicase 0.27 PFLU_RS04350 metalloprotease PmbA low > 109
Pseudomonas fluorescens SBW25 0.23 PFLU_RS06455 ligase-associated DNA damage response DEXH box helicase 0.27 PFLU_RS04350 metalloprotease PmbA low > 109
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS30600 ligase-associated DNA damage response DEXH box helicase 0.29 QEN71_RS04270 metalloprotease PmbA low > 153
Pseudomonas simiae WCS417 0.23 PS417_06390 DEAD/DEAH box helicase 0.27 PS417_04295 peptidase PmbA low > 88
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.3657.1 FIG003033: Helicase domain protein 0.29 Xcc-8004.1885.1 TldE protein, part of TldE/TldD proteolytic complex low > 74
Variovorax sp. OAS795 0.23 ABID97_RS00385 ligase-associated DNA damage response DEXH box helicase 0.33 ABID97_RS20695 metalloprotease PmbA low > 91
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS22150 DEAD/DEAH box helicase 0.29 BPHYT_RS14705 peptidase C69 low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_3880 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal 0.26 Psyr_4154 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 low > 86
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_3880 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal 0.26 Psyr_4154 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 low > 86
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_05520 DNA ligase-associated DEXH box helicase 0.26 AO356_07085 peptidase PmbA low > 104
Acidovorax sp. GW101-3H11 0.22 Ac3H11_4923 FIG003033: Helicase domain protein 0.30 Ac3H11_3262 TldE protein, part of TldE/TldD proteolytic complex low > 79
Pseudomonas sp. RS175 0.22 PFR28_00502 hypothetical protein 0.27 PFR28_00163 Metalloprotease PmbA low > 88
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_2963 FIG003033: Helicase domain protein 0.26 Pf6N2E2_3278 TldE protein, part of TldE/TldD proteolytic complex low > 103
Methanococcus maripaludis S2 0.14 MMP_RS05890 ATP-dependent helicase 0.12 MMP_RS07835 TldD/PmbA family protein low > 25
Methanococcus maripaludis JJ 0.14 MMJJ_RS08465 ATP-dependent helicase 0.11 MMJJ_RS06520 TldD/PmbA family protein low > 28

Not shown: 3 genomes with orthologs for CCNA_02121 only; 53 genomes with orthologs for CCNA_00311 only