Conservation of cofitness between BPHYT_RS01650 and BPHYT_RS35160 in Burkholderia phytofirmans PsJN

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS01650 23S rRNA methyltransferase 1.0 BPHYT_RS35160 PKHD-type hydroxylase 0.32 14
Paraburkholderia bryophila 376MFSha3.1 0.94 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.76 H281DRAFT_02287 PKHD-type hydroxylase low > 103
Paraburkholderia graminis OAS925 0.94 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.75 ABIE53_000375 PKHD-type hydroxylase low > 113
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.75 QEN71_RS10170 Fe2+-dependent dioxygenase low > 153
Ralstonia sp. UNC404CL21Col 0.76 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase 0.71 ABZR87_RS16375 Fe2+-dependent dioxygenase low > 80
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS01670 23S rRNA methyltransferase 0.74 RR42_RS17775 Fe(II)-dependent oxygenase low > 128
Dechlorosoma suillum PS 0.56 Dsui_0653 putative SAM-dependent methyltransferase 0.51 Dsui_1666 putative iron-regulated protein — —
Shewanella oneidensis MR-1 0.49 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.54 SO3913 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.48 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.55 Shewana3_0717 putative hydroxylase (RefSeq) low > 73
Variovorax sp. SCN45 0.47 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) 0.68 GFF2640 PKHD-type hydroxylase YbiX low > 127
Alteromonas macleodii MIT1002 0.47 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.52 MIT1002_03724 PKHD-type hydroxylase low > 70
Klebsiella michiganensis M5al 0.47 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.52 BWI76_RS08940 PKHD-type hydroxylase low > 92
Escherichia coli ECRC101 0.46 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 MCAODC_25460 PKHD-type hydroxylase YbiX low > 87
Escherichia coli ECRC100 0.46 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 OKFHMN_06245 PKHD-type hydroxylase YbiX low > 80
Escherichia coli ECRC102 0.46 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 NIAGMN_04290 PKHD-type hydroxylase YbiX — —
Escherichia coli ECRC62 0.46 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.53 BNILDI_20875 PKHD-type hydroxylase YbiX low > 75
Escherichia coli ECRC98 0.46 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 JDDGAC_09880 PKHD-type hydroxylase YbiX low > 86
Escherichia coli ECRC99 0.46 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 KEDOAH_21665 PKHD-type hydroxylase YbiX — —
Escherichia coli BL21 0.46 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.53 ECD_00771 Fe(II)-dependent oxygenase superfamily protein low > 61
Escherichia coli BW25113 0.46 b0967 yccW predicted methyltransferase (RefSeq) 0.53 b0804 ybiX putative enzyme (VIMSS) low > 76
Escherichia coli ECOR27 0.46 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.53 NOLOHH_22595 PKHD-type hydroxylase YbiX low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.53 OHPLBJKB_02909 PKHD-type hydroxylase low > 73
Escherichia coli Nissle 1917 0.46 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.53 ECOLIN_RS04280 PKHD-type hydroxylase YbiX — —
Escherichia coli ECOR38 0.46 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.54 HEPCGN_01795 PKHD-type hydroxylase YbiX low > 87
Escherichia fergusonii Becca 0.46 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.53 EFB2_03301 PKHD-type hydroxylase low > 86
Variovorax sp. OAS795 0.45 ABID97_RS06155 class I SAM-dependent methyltransferase 0.52 ABID97_RS10780 Fe2+-dependent dioxygenase low > 91
Acidovorax sp. GW101-3H11 0.45 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.47 Ac3H11_2837 Iron-uptake factor PiuC low > 79
Azospirillum brasilense Sp245 0.28 AZOBR_RS01190 SAM-dependent methyltransferase 0.52 AZOBR_RS19075 Fe(II)-dependent oxygenase low > 97
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.56 Xcc-8004.1693.1 Iron-uptake factor PiuC low > 74
Pseudomonas sp. RS175 0.26 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.56 PFR28_00111 PKHD-type hydroxylase low > 88
Azospirillum sp. SherDot2 0.26 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I 0.54 MPMX19_02864 PKHD-type hydroxylase low > 112
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase 0.59 ABZR86_RS09180 Fe2+-dependent dioxygenase low > 74
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.56 PfGW456L13_5069 Iron-uptake factor PiuC low > 87
Pseudomonas putida KT2440 0.26 PP_5127 ribosomal RNA large subunit methyltransferase I 0.56 PP_0862 PKHD-type hydroxylase PP_0862 low > 96
Pseudomonas simiae WCS417 0.26 PS417_26880 SAM-dependent methyltransferase 0.55 PS417_03995 Fe(II)-dependent oxygenase low > 88
Lysobacter sp. OAE881 0.26 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.58 ABIE51_RS15765 Fe2+-dependent dioxygenase — —
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.55 Pf1N1B4_1140 Iron-uptake factor PiuC low > 87
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_08330 SAM-dependent methyltransferase 0.54 AO353_05455 Fe(II)-dependent oxygenase low > 101
Pseudomonas stutzeri RCH2 0.25 Psest_0236 Predicted SAM-dependent methyltransferases 0.56 Psest_3348 Uncharacterized iron-regulated protein low > 67
Rhodanobacter denitrificans MT42 0.25 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.37 LRK55_RS04510 Fe2+-dependent dioxygenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.37 LRK54_RS04730 Fe2+-dependent dioxygenase low > 59
Marinobacter adhaerens HP15 0.24 HP15_460 SAM-dependent methyltransferase 0.38 HP15_3551 putative hydroxylase low > 73
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.36 OKGIIK_11515 Fe2+-dependent dioxygenase low > 52

Not shown: 39 genomes with orthologs for BPHYT_RS01650 only; 10 genomes with orthologs for BPHYT_RS35160 only