Conservation of cofitness between BPHYT_RS15895 and BPHYT_RS18610 in Burkholderia phytofirmans PsJN

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS15895 transglutaminase 1.0 BPHYT_RS18610 lytic transglycosylase 0.31 9
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_04115 Regulator of sirC expression, contains transglutaminase-like and TPR domains 0.90 H281DRAFT_05816 soluble lytic murein transglycosylase low > 103
Paraburkholderia graminis OAS925 0.97 ABIE53_003350 regulator of sirC expression with transglutaminase-like and TPR domain 0.90 ABIE53_000044 soluble lytic murein transglycosylase low > 113
Paraburkholderia sabiae LMG 24235 0.89 QEN71_RS02805 SirB1 family protein 0.89 QEN71_RS28635 lytic transglycosylase domain-containing protein low > 153
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS00860 SirB1 family protein 0.52 ABZR87_RS04885 lytic transglycosylase domain-containing protein low > 80
Ralstonia solanacearum GMI1000 0.61 RS_RS12825 transglutaminase 0.52 RS_RS00445 lytic transglycosylase low > 80
Ralstonia solanacearum PSI07 0.61 RPSI07_RS12095 transglutaminase 0.52 RPSI07_RS23510 lytic transglycosylase low > 81
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS05205 transglutaminase 0.52 RALBFv3_RS09860 lytic transglycosylase low > 76
Ralstonia solanacearum UW163 0.60 UW163_RS08420 transglutaminase 0.52 UW163_RS03720 lytic transglycosylase — —
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS17195 transglutaminase 0.50 RR42_RS01405 lytic transglycosylase low > 128
Variovorax sp. OAS795 0.49 ABID97_RS08655 tetratricopeptide repeat protein 0.31 ABID97_RS06595 transglycosylase SLT domain-containing protein low > 91
Variovorax sp. SCN45 0.49 GFF3931 Protein sirB1 0.30 GFF5163 Soluble lytic murein transglycosylase (EC 4.2.2.n1) low > 127
Acidovorax sp. GW101-3H11 0.49 Ac3H11_1327 Protein sirB1 0.30 Ac3H11_1834 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF3424 Protein sirB1 0.27 GFF1614 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 90
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06985 transglutaminase 0.45 HSERO_RS21415 lytic transglycosylase low > 78
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.1134.1 Protein sirB1 0.13 Xcc-8004.961.1 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 74
Erwinia tracheiphila SCR3 0.21 LU632_RS10745 sirB1 invasion regulator SirB1 0.13 LU632_RS02575 sltY murein transglycosylase low > 74
Vibrio cholerae E7946 ATCC 55056 0.20 CSW01_10830 hypothetical protein 0.12 CSW01_03655 murein transglycosylase low > 62
Dickeya dadantii 3937 0.19 DDA3937_RS10980 tetratricopeptide repeat-containing protein 0.15 DDA3937_RS18455 murein transglycosylase low > 74
Dickeya dianthicola 67-19 0.18 HGI48_RS10930 tetratricopeptide repeat-containing protein 0.14 HGI48_RS18385 murein transglycosylase — —
Dickeya dianthicola ME23 0.18 DZA65_RS11390 tetratricopeptide repeat-containing protein 0.14 DZA65_RS19525 murein transglycosylase low > 75
Escherichia fergusonii Becca 0.18 EFB2_02713 hypothetical protein 0.13 EFB2_04052 Soluble lytic murein transglycosylase low > 86
Escherichia coli Nissle 1917 0.18 ECOLIN_RS07335 invasion regulator SirB1 0.13 ECOLIN_RS25210 murein transglycosylase low > 55
Rahnella sp. WP5 0.18 EX31_RS07300 tetratricopeptide repeat-containing protein 0.13 EX31_RS03985 murein transglycosylase low > 89
Escherichia coli ECOR38 0.17 HEPCGN_24930 sirB1 invasion regulator SirB1 0.13 HEPCGN_09175 sltY murein transglycosylase low > 87
Escherichia coli BL21 0.17 ECD_01189 transglutaminase-like TPR-repeat protein 0.13 ECD_04268 lytic murein transglycosylase, soluble low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_02473 hypothetical protein 0.13 OHPLBJKB_03669 Soluble lytic murein transglycosylase low > 73
Escherichia coli ECOR27 0.17 NOLOHH_20595 sirB1 invasion regulator SirB1 0.13 NOLOHH_03500 sltY murein transglycosylase low > 75
Escherichia coli ECRC101 0.17 MCAODC_21795 sirB1 invasion regulator SirB1 0.13 MCAODC_01685 sltY murein transglycosylase low > 87
Escherichia coli ECRC102 0.17 NIAGMN_27770 sirB1 invasion regulator SirB1 0.13 NIAGMN_09020 sltY murein transglycosylase — —
Escherichia coli ECRC62 0.17 BNILDI_18750 sirB1 invasion regulator SirB1 0.13 BNILDI_08095 sltY murein transglycosylase low > 75
Escherichia coli ECRC100 0.17 OKFHMN_28465 sirB1 invasion regulator SirB1 0.13 OKFHMN_11170 sltY murein transglycosylase low > 80
Escherichia coli ECRC99 0.17 KEDOAH_25460 sirB1 invasion regulator SirB1 0.13 KEDOAH_16985 sltY murein transglycosylase — —
Escherichia coli ECRC98 0.17 JDDGAC_06110 sirB1 invasion regulator SirB1 0.13 JDDGAC_14765 sltY murein transglycosylase low > 86
Pseudomonas putida KT2440 0.17 PP_4618 conserved protein of unknown function 0.16 PP_2130 putative Soluble lytic transglycosylase low > 96
Escherichia coli BW25113 0.17 b1214 ychA predicted transcriptional regulator (NCBI) 0.13 b4392 slt soluble lytic murein transglycosylase (VIMSS) low > 76
Pectobacterium carotovorum WPP14 0.17 HER17_RS10495 invasion regulator SirB1 0.13 HER17_RS02750 murein transglycosylase low > 75
Pantoea sp. MT58 0.17 IAI47_11255 tetratricopeptide repeat-containing protein 0.13 IAI47_16260 murein transglycosylase — —
Serratia liquefaciens MT49 0.17 IAI46_10295 tetratricopeptide repeat-containing protein 0.12 IAI46_02985 murein transglycosylase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF2771 FIG002708: Protein SirB1 0.13 GFF1060 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 78
Klebsiella michiganensis M5al 0.16 BWI76_RS17420 hypothetical protein 0.13 BWI76_RS04185 murein transglycosylase low > 92
Enterobacter sp. TBS_079 0.16 MPMX20_02633 hypothetical protein 0.13 MPMX20_00699 Soluble lytic murein transglycosylase low > 85
Enterobacter asburiae PDN3 0.16 EX28DRAFT_0833 Uncharacterized conserved protein 0.13 EX28DRAFT_3602 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 76
Pseudomonas fluorescens FW300-N1B4 0.16 Pf1N1B4_1022 Protein sirB1 0.17 Pf1N1B4_3898 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_4959 Protein sirB1 0.16 PfGW456L13_4045 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 87
Pseudomonas sp. S08-1 0.15 OH686_18730 hypothetical protein 0.16 OH686_21900 Soluble lytic murein transglycosylase low > 80
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_16840 hypothetical protein 0.17 AO356_02350 lytic transglycosylase low > 104
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_5293 Protein sirB1 0.17 Pf6N2E2_2294 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 103
Pseudomonas fluorescens SBW25 0.14 PFLU_RS05105 tetratricopeptide repeat protein 0.17 PFLU_RS07630 transglycosylase SLT domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.14 PFLU_RS05105 tetratricopeptide repeat protein 0.17 PFLU_RS07630 transglycosylase SLT domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.14 AO353_15565 hypothetical protein 0.16 AO353_00530 lytic transglycosylase low > 101
Pseudomonas simiae WCS417 0.14 PS417_05035 hypothetical protein 0.17 PS417_07550 lytic transglycosylase low > 88
Pseudomonas sp. RS175 0.13 PFR28_00224 hypothetical protein 0.17 PFR28_01106 Soluble lytic murein transglycosylase low > 88

Not shown: 6 genomes with orthologs for BPHYT_RS15895 only; 15 genomes with orthologs for BPHYT_RS18610 only