Conservation of cofitness between BPHYT_RS09440 and BPHYT_RS16990 in Burkholderia phytofirmans PsJN

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS09440 glycerate kinase 1.0 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.29 11
Paraburkholderia graminis OAS925 0.86 ABIE53_002112 glycerate kinase 0.95 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.23 89
Paraburkholderia bryophila 376MFSha3.1 0.85 H281DRAFT_00894 glycerate kinase 0.96 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 103
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS21995 glycerate kinase 0.88 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 153
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10055 glycerate kinase 0.71 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 78
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS23230 glycerate kinase 0.72 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 128
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS14645 glycerate kinase 0.59 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas fluorescens SBW25 0.37 PFLU_RS14645 glycerate kinase 0.59 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_26900 glycerate kinase 0.57 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 101
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_4998 Glycerate kinase (EC 2.7.1.31) 0.57 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_2941 Glycerate kinase (EC 2.7.1.31) 0.57 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_22870 glycerate kinase 0.57 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.31 15
Pseudomonas simiae WCS417 0.35 PS417_13970 glycerate kinase 0.58 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 88
Pseudomonas sp. S08-1 0.35 OH686_04780 Glycerate kinase 0.57 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_3115 Glycerate kinase 0.56 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_3115 Glycerate kinase 0.56 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas sp. RS175 0.35 PFR28_02469 Glycerate 2-kinase 0.57 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 88
Pseudomonas putida KT2440 0.34 PP_3178 glycerate kinase 0.57 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 96
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_460 Glycerate kinase (EC 2.7.1.31) 0.57 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.24 2
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5387.1 Glycerate kinase (EC 2.7.1.31) 0.47 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) low > 74
Serratia liquefaciens MT49 0.29 IAI46_05265 glycerate kinase 0.57 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Shewanella loihica PV-4 0.29 Shew_2534 glycerate kinase (RefSeq) 0.57 Shew_3144 UDP-N-acetylmuramate (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4430 Glycerate kinase (EC 2.7.1.31) 0.57 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 78
Pectobacterium carotovorum WPP14 0.28 HER17_RS04100 glycerate kinase 0.56 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Shewanella sp. ANA-3 0.28 Shewana3_2685 glycerate kinase (RefSeq) 0.57 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.28 MPMX26_00368 Glycerate 2-kinase 0.50 MPMX26_03053 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_18660 glycerate kinase 0.57 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 62
Klebsiella michiganensis M5al 0.28 BWI76_RS22820 glycerate kinase 0.57 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 92
Escherichia coli ECOR38 0.28 HEPCGN_06530 glxK glycerate 3-kinase 0.57 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Enterobacter sp. TBS_079 0.27 MPMX20_03656 Glycerate 2-kinase 0.57 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 85
Escherichia coli ECRC62 0.27 BNILDI_22305 glxK glycerate 3-kinase 0.57 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli ECRC101 0.27 MCAODC_27105 glxK glycerate 3-kinase 0.57 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli ECRC100 0.27 OKFHMN_07885 glxK glycerate 3-kinase 0.57 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 80
Escherichia coli ECRC99 0.27 KEDOAH_20080 glxK glycerate 3-kinase 0.57 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC98 0.27 JDDGAC_11535 glxK glycerate 3-kinase 0.57 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 86
Escherichia coli ECRC102 0.27 NIAGMN_05940 glxK glycerate 3-kinase 0.57 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECOR27 0.27 NOLOHH_00875 glxK glycerate 3-kinase 0.57 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Shewanella oneidensis MR-1 0.27 SO1770 glycerate kinase, putative (NCBI ptt file) 0.57 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) low > 76
Escherichia coli Nissle 1917 0.27 ECOLIN_RS02985 glycerate 3-kinase 0.56 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_03167 Glycerate 3-kinase 0.57 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 73
Rahnella sp. WP5 0.27 EX31_RS07975 glycerate kinase 0.54 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 89
Enterobacter asburiae PDN3 0.27 EX28DRAFT_2867 glycerate kinase 0.56 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 76
Escherichia coli BL21 0.27 ECD_00464 glycerate kinase II 0.57 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 61
Dickeya dianthicola ME23 0.26 DZA65_RS18160 glycerate kinase 0.56 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Escherichia coli BW25113 0.26 b0514 glxK glycerate kinase II (NCBI) 0.56 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) low > 76
Dickeya dianthicola 67-19 0.26 HGI48_RS17085 glycerate kinase 0.57 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Erwinia tracheiphila SCR3 0.26 LU632_RS06335 glycerate kinase 0.55 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Escherichia fergusonii Becca 0.26 EFB2_03548 Glycerate 3-kinase 0.57 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 86
Dickeya dadantii 3937 0.26 DDA3937_RS17030 glycerate kinase 0.57 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Shewanella amazonensis SB2B 0.26 Sama_3228 glycerate kinase (RefSeq) 0.56 Sama_0769 UDP-N-acetylmuramate (RefSeq) low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS00815 glycerate kinase 0.16 ABZR88_RS14425 UDP-N-acetylmuramate--L-alanine ligase low > 71

Not shown: 8 genomes with orthologs for BPHYT_RS09440 only; 22 genomes with orthologs for BPHYT_RS16990 only