Conservation of cofitness between BPHYT_RS23930 and BPHYT_RS16855 in Burkholderia phytofirmans PsJN

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS23930 triphosphoribosyl-dephospho-CoA synthase 1.0 BPHYT_RS16855 16S rRNA methyltransferase 0.40 9
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_05281 triphosphoribosyl-dephospho-CoA synthase 0.86 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase low > 103
Paraburkholderia graminis OAS925 0.73 ABIE53_006548 triphosphoribosyl-dephospho-CoA synthase 0.86 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase — —
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS07660 triphosphoribosyl-dephospho-CoA synthase 0.77 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Rahnella sp. WP5 0.44 EX31_RS04900 triphosphoribosyl-dephospho-CoA synthase 0.37 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0443 Triphosphoribosyl-dephospho-CoA synthase 0.34 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0443 Triphosphoribosyl-dephospho-CoA synthase 0.34 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4620 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) 0.33 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 103
Pseudomonas sp. RS175 0.43 PFR28_04222 '2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase' transl_table=11 0.32 PFR28_04209 Ribosomal RNA small subunit methyltransferase E low > 88
Klebsiella michiganensis M5al 0.42 BWI76_RS16025 triphosphoribosyl-dephospho-CoA synthase 0.33 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Enterobacter sp. TBS_079 0.42 MPMX20_04254 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 0.34 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Acinetobacter radioresistens SK82 0.41 MPMX26_01913 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 0.34 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E — —
Pseudomonas stutzeri RCH2 0.41 Psest_0103 triphosphoribosyl-dephospho-CoA synthase MdcB 0.33 Psest_0305 RNA methyltransferase, RsmE family low > 67
Pantoea sp. MT58 0.40 IAI47_01740 triphosphoribosyl-dephospho-CoA synthase 0.35 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Pseudomonas fluorescens SBW25 0.40 PFLU_RS28270 triphosphoribosyl-dephospho-CoA synthase 0.33 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_13515 triphosphoribosyl-dephospho-CoA synthase MdcB 0.33 AO356_13565 16S rRNA methyltransferase low > 104
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS28270 triphosphoribosyl-dephospho-CoA synthase 0.33 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS02960 triphosphoribosyl-dephospho-CoA synthase 0.57 RR42_RS17590 16S rRNA methyltransferase low > 128
Pseudomonas simiae WCS417 0.39 PS417_26615 triphosphoribosyl-dephospho-CoA synthase 0.33 PS417_26545 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2362 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) 0.33 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_1029 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) 0.33 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 87
Dickeya dadantii 3937 0.38 DDA3937_RS08100 triphosphoribosyl-dephospho-CoA synthase 0.36 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.36 74
Dickeya dianthicola 67-19 0.37 HGI48_RS07830 triphosphoribosyl-dephospho-CoA synthase 0.35 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Dickeya dianthicola ME23 0.37 DZA65_RS08420 triphosphoribosyl-dephospho-CoA synthase 0.35 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS23440 triphosphoribosyl-dephospho-CoA synthase 0.46 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_25340 triphosphoribosyl-dephospho-CoA synthase MdcB 0.33 AO353_08050 16S rRNA methyltransferase low > 101
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS03815 triphosphoribosyl-dephospho-CoA synthase 0.36 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_04140 triphosphoribosyl-dephospho-CoA synthase 0.33 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Azospirillum sp. SherDot2 0.23 MPMX19_02834 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 0.17 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E low > 112
Serratia liquefaciens MT49 0.23 IAI46_16980 triphosphoribosyl-dephospho-CoA synthase CitG 0.36 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF217 '2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme- A synthase (EC 2.7.8.25)' transl_table=11 0.34 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 78
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS13440 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase 0.46 HSERO_RS07110 16S rRNA methyltransferase low > 78
Rhodospirillum rubrum S1H 0.21 Rru_A1319 Triphosphoribosyl-dephospho-CoA synthase (NCBI) 0.14 Rru_A0571 hypothetical protein (NCBI) low > 58
Escherichia coli ECOR38 0.21 HEPCGN_00805 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E low > 87
Pectobacterium carotovorum WPP14 0.21 HER17_RS12155 triphosphoribosyl-dephospho-CoA synthase CitG 0.32 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli ECRC100 0.21 OKFHMN_07470 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.62 8
Escherichia coli ECRC101 0.21 MCAODC_26685 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Escherichia coli ECRC102 0.21 NIAGMN_05525 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli ECRC99 0.21 KEDOAH_20500 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli Nissle 1917 0.21 ECOLIN_RS03350 triphosphoribosyl-dephospho-CoA synthase CitG 0.36 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia fergusonii Becca 0.21 EFB2_03478 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 0.36 EFB2_00956 Ribosomal RNA small subunit methyltransferase E low > 86
Escherichia coli ECRC98 0.21 JDDGAC_11115 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Escherichia coli ECOR27 0.21 NOLOHH_23845 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli BW25113 0.21 b0613 citG triphosphoribosyl-dephospho-CoA transferase (NCBI) 0.36 b2946 yggJ orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_03092 '2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase' transl_table=11 0.36 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E low > 73
Escherichia coli BL21 0.21 ECD_00581 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 0.36 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC62 0.21 BNILDI_21855 citG triphosphoribosyl-dephospho-CoA synthase CitG 0.36 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Fusobacterium nucleatum SB010 0.19 HUW76_08600 triphosphoribosyl-dephospho-CoA synthase CitG 0.16 HUW76_04180 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 35
Enterobacter asburiae PDN3 0.16 EX28DRAFT_3002 triphosphoribosyl-dephospho-CoA synthase CitG 0.34 EX28DRAFT_2984 RNA methyltransferase, RsmE family low > 76

Not shown: 1 genomes with orthologs for BPHYT_RS23930 only; 47 genomes with orthologs for BPHYT_RS16855 only