Conservation of cofitness between Atu4173 and Atu3290 in Agrobacterium fabrum C58

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu4173 phosphoenolpyruvate-protein phosphotransferase 1.0 Atu3290 phosphomethylpyrimidine kinase 0.38 16
Rhizobium sp. OAE497 0.84 ABIE40_RS17300 phosphoenolpyruvate--protein phosphotransferase 0.43 ABIE40_RS25930 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Sinorhizobium meliloti 1021 0.83 SMc02437 phosphoenolpyruvate phosphotransferase PTSP (enzyme I-Ntr) protein 0.59 SM_b20962 phoshomethylpyrimidine kinase — —
Rhodopseudomonas palustris CGA009 0.59 TX73_003130 phosphoenolpyruvate--protein phosphotransferase 0.53 TX73_020570 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Bosea sp. OAE506 0.58 ABIE41_RS23820 phosphoenolpyruvate--protein phosphotransferase 0.48 ABIE41_RS21620 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP 0.34 CCNA_03331 phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase — —
Caulobacter crescentus NA1000 0.46 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP 0.34 CCNA_03331 phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase — —
Magnetospirillum magneticum AMB-1 0.46 AMB_RS08150 phosphoenolpyruvate--protein phosphotransferase 0.29 AMB_RS16155 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS14485 phosphoenolpyruvate--protein phosphotransferase 0.33 A4249_RS15985 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS18900 peptidase 0.35 AZOBR_RS07045 phosphomethylpyrimidine kinase — —
Azospirillum sp. SherDot2 0.45 MPMX19_02675 Phosphoenolpyruvate-dependent phosphotransferase system 0.33 MPMX19_06182 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase — —
Rhodospirillum rubrum S1H 0.44 Rru_A0745 PTSINtr with GAF domain, PtsP (NCBI) 0.38 Rru_A1102 Phosphomethylpyrimidine kinase (NCBI) — —
Dinoroseobacter shibae DFL-12 0.43 Dshi_2062 PTSINtr with GAF domain, PtsP (RefSeq) 0.42 Dshi_0915 phosphomethylpyrimidine kinase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.42 PGA1_c23500 phosphoenolpyruvate-protein phosphotransferase PtsP 0.19 PGA1_c09030 phosphomethylpyrimidine kinase ThiD low > 62
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_2514 phosphoenolpyruvate-protein phosphotransferase 0.27 Ga0059261_1961 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Pseudomonas simiae WCS417 0.27 PS417_26985 phosphoenolpyruvate-protein phosphotransferase 0.27 PS417_24600 hydrogenase low > 88
Pseudomonas putida KT2440 0.26 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) 0.27 PP_4782 Phosphomethylpyrimidine kinase low > 96
Pseudomonas fluorescens SBW25 0.26 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase 0.26 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.65 106
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase 0.26 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 109
Pseudomonas stutzeri RCH2 0.26 Psest_3862 phosphoenolpyruvate-protein phosphotransferase 0.26 Psest_0537 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 67
Pseudomonas sp. S08-1 0.26 OH686_11430 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.26 OH686_09185 Hydroxymethylpyrimidine phosphate kinase ThiD low > 80
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_953 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.26 PfGW456L13_1385 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 87
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_3942 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.23 Pf6N2E2_5024 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 103
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2284 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.23 Pf1N1B4_2718 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 87
Pseudomonas sp. RS175 0.26 PFR28_04830 Phosphoenolpyruvate-dependent phosphotransferase system 0.24 PFR28_03843 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 88
Acinetobacter radioresistens SK82 0.26 MPMX26_00341 Phosphoenolpyruvate-dependent phosphotransferase system 0.28 MPMX26_02438 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase — —
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_10350 phosphoenolpyruvate-protein phosphotransferase 0.27 AO356_15435 hydrogenase low > 104
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_08465 phosphoenolpyruvate-protein phosphotransferase 0.26 AO353_06350 hydrogenase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase 0.26 Psyr_4340 phosphomethylpyrimidine kinase, putative low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase 0.26 Psyr_4340 phosphomethylpyrimidine kinase, putative low > 86
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_03525 phosphoenolpyruvate-protein phosphotransferase PtsP 0.44 CSW01_06545 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 62
Rahnella sp. WP5 0.25 EX31_RS13200 phosphoenolpyruvate--protein phosphotransferase 0.50 EX31_RS20390 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 89
Klebsiella michiganensis M5al 0.25 BWI76_RS23270 phosphoenolpyruvate--protein phosphotransferase PtsP 0.50 BWI76_RS19375 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF1311 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.50 GFF3834 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 78
Escherichia coli ECRC62 0.25 BNILDI_10370 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 BNILDI_14330 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli BL21 0.25 ECD_02677 PEP-protein phosphotransferase enzyme I; GAF domain containing protein 0.50 ECD_02031 hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase low > 60
Escherichia fergusonii Becca 0.25 EFB2_01055 Phosphoenolpyruvate-dependent phosphotransferase system 0.50 EFB2_01754 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 86
Escherichia coli ECRC101 0.25 MCAODC_10530 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 MCAODC_21085 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECRC99 0.25 KEDOAH_08125 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 KEDOAH_04075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_00901 Phosphoenolpyruvate-dependent phosphotransferase system 0.50 OHPLBJKB_01607 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 73
Enterobacter sp. TBS_079 0.25 MPMX20_03692 Phosphoenolpyruvate-dependent phosphotransferase system 0.50 MPMX20_03076 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 85
Escherichia coli ECOR27 0.25 NOLOHH_11890 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 NOLOHH_15415 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 57
Escherichia coli ECRC101 0.25 OKFHMN_20005 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 OKFHMN_24075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli Nissle 1917 0.25 ECOLIN_RS15875 phosphoenolpyruvate--protein phosphotransferase 0.49 ECOLIN_RS12335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECRC98 0.25 JDDGAC_23670 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 JDDGAC_28185 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECRC102 0.25 NIAGMN_17775 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 NIAGMN_22020 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECOR38 0.25 HEPCGN_19260 ptsP phosphoenolpyruvate--protein phosphotransferase 0.50 HEPCGN_02760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 85
Escherichia coli BW25113 0.25 b2829 ptsP fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) 0.50 b2103 thiD phosphomethylpyrimidine kinase (NCBI) low > 76
Enterobacter asburiae PDN3 0.24 EX28DRAFT_2904 phosphoenolpyruvate-protein phosphotransferase 0.51 EX28DRAFT_0469 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 76
Erwinia tracheiphila SCR3 0.24 LU632_RS06110 ptsP phosphoenolpyruvate--protein phosphotransferase 0.49 LU632_RS08590 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 74
Serratia liquefaciens MT49 0.24 IAI46_20450 phosphoenolpyruvate--protein phosphotransferase 0.50 IAI46_19100 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 86
Pantoea sp. MT58 0.24 IAI47_03920 phosphoenolpyruvate--protein phosphotransferase 0.47 IAI47_06810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 76
Dickeya dianthicola 67-19 0.24 HGI48_RS04960 phosphoenolpyruvate--protein phosphotransferase 0.48 HGI48_RS15410 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 71
Dickeya dadantii 3937 0.24 DDA3937_RS04950 phosphoenolpyruvate--protein phosphotransferase 0.49 DDA3937_RS15335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.34 36
Dickeya dianthicola ME23 0.24 DZA65_RS05300 phosphoenolpyruvate--protein phosphotransferase 0.48 DZA65_RS16235 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Pectobacterium carotovorum WPP14 0.23 HER17_RS16580 phosphoenolpyruvate--protein phosphotransferase 0.50 HER17_RS06265 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75

Not shown: 6 genomes with orthologs for Atu4173 only; 36 genomes with orthologs for Atu3290 only