Conservation of cofitness between Atu3469 and Atu1688 in Agrobacterium fabrum C58

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3469 phosphoglyceromutase 1.0 Atu1688 indole-3-glycerol-phosphate synthase 0.66 5
Phaeobacter inhibens DSM 17395 0.68 PGA1_c02770 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI 0.56 PGA1_c16910 indole-3-glycerol phosphate synthase TrpC
Dinoroseobacter shibae DFL-12 0.67 Dshi_0089 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (RefSeq) 0.53 Dshi_1800 Indole-3-glycerol-phosphate synthase (RefSeq)
Azospirillum brasilense Sp245 0.54 AZOBR_RS04055 phosphoglyceromutase 0.53 AZOBR_RS07450 indole-3-glycerol-phosphate synthase
Azospirillum sp. SherDot2 0.54 MPMX19_01939 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.55 MPMX19_01014 Indole-3-glycerol phosphate synthase 0.69 68
Rhodopseudomonas palustris CGA009 0.53 TX73_001765 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.67 TX73_014985 indole-3-glycerol phosphate synthase TrpC
Rhodospirillum rubrum S1H 0.52 Rru_A1234 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI) 0.49 Rru_A1897 Indole-3-glycerol-phosphate synthase (NCBI)
Bosea sp. OAE506 0.51 ABIE41_RS09590 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.58 ABIE41_RS17425 indole-3-glycerol phosphate synthase TrpC
Magnetospirillum magneticum AMB-1 0.48 AMB_RS01545 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.50 AMB_RS14415 indole-3-glycerol phosphate synthase TrpC
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_353 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) 0.47 PfGW456L13_1222 Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
Marinobacter adhaerens HP15 0.44 HP15_3005 phosphoglyceromutase 0.50 HP15_3291 indole-3-glycerol phosphate synthase
Pseudomonas simiae WCS417 0.44 PS417_01605 phosphoglycerate mutase 0.48 PS417_25710 indole-3-glycerol-phosphate synthase 0.42 39
Lysobacter sp. OAE881 0.44 ABIE51_RS19265 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.50 ABIE51_RS04190 indole-3-glycerol phosphate synthase TrpC low > 62
Pseudomonas putida KT2440 0.44 PP_5056 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.45 PP_0422 Indole-3-glycerol phosphate synthase
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS01655 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.48 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC
Pseudomonas fluorescens SBW25 0.44 PFLU_RS01655 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.48 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_12115 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.47 AO353_07210 indole-3-glycerol-phosphate synthase 0.47 31
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_4885 phosphoglycerate mutase 0.74 Psyr_0756 indole-3-glycerol phosphate synthase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_4885 phosphoglycerate mutase 0.74 Psyr_0756 indole-3-glycerol phosphate synthase
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_09770 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.46 AO356_14440 indole-3-glycerol-phosphate synthase
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1617 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) 0.47 Pf1N1B4_2549 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.61 30
Pseudomonas sp. RS175 0.43 PFR28_04938 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.46 PFR28_04043 Indole-3-glycerol phosphate synthase
Pseudomonas sp. S08-1 0.43 OH686_14655 phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 0.47 OH686_15140 Indole-3-glycerol phosphate synthase
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_3832 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) 0.46 Pf6N2E2_4826 Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
Pseudomonas stutzeri RCH2 0.42 Psest_0162 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.47 Psest_3647 Indole-3-glycerol phosphate synthase
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_0844 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.31 Echvi_2508 Indole-3-glycerol phosphate synthase
Acinetobacter radioresistens SK82 0.42 MPMX26_00160 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.45 MPMX26_00983 Indole-3-glycerol phosphate synthase
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_0469 yibO phosphoglyceromutase 0.33 Synpcc7942_1197 trpC indole-3-glycerol-phosphate synthase
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS02685 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.27 HMPREF1181_RS15340 indole-3-glycerol phosphate synthase TrpC
Bacteroides thetaiotaomicron VPI-5482 0.39 BT3419 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (NCBI ptt file) 0.32 BT0529 indole-3-glycerol phosphate synthase (NCBI ptt file)
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS14540 phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 0.36 CA265_RS22900 indole-3-glycerol phosphate synthase
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS04580 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.31 HMPREF1078_RS00130 indole-3-glycerol phosphate synthase TrpC
Phocaeicola vulgatus CL09T03C04 0.38 HMPREF1058_RS12285 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.26 HMPREF1058_RS07190 indole-3-glycerol phosphate synthase TrpC
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS04505 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.26 ABI39_RS21065 indole-3-glycerol phosphate synthase TrpC low > 72
Bacteroides ovatus ATCC 8483 0.38 BACOVA_01888 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.31 BACOVA_03783 indole-3-glycerol phosphate synthase
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS15685 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.30 ABZR88_RS16605 indole-3-glycerol phosphate synthase TrpC
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU1619 gpmA phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TIGR) 0.19 DVU0468 trpC indole-3-glycerol phosphate synthase (TIGR)
Dechlorosoma suillum PS 0.28 Dsui_2175 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.46 Dsui_0168 Indole-3-glycerol phosphate synthase

Not shown: 27 genomes with orthologs for Atu3469 only; 30 genomes with orthologs for Atu1688 only