Conservation of cofitness between AMB_RS12315 and AMB_RS22540 in Magnetospirillum magneticum AMB-1

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Magnetospirillum magneticum AMB-1 1.0 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 1.0 AMB_RS22540 alpha-hydroxy-acid oxidizing protein 0.56 3
Azospirillum brasilense Sp245 0.50 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.26 AZOBR_RS27055 L-lactate dehydrogenase — —
Azospirillum sp. SherDot2 0.49 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.30 MPMX19_04146 L-lactate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.39 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.30 TX73_022385 alpha-hydroxy acid oxidase low > 86
Acinetobacter radioresistens SK82 0.38 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.28 MPMX26_02257 L-lactate dehydrogenase low > 36
Phaeobacter inhibens DSM 17395 0.38 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.35 PGA1_c07690 (S)-mandelate dehydrogenase MdlB — —
Bosea sp. OAE506 0.36 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.35 ABIE41_RS11285 alpha-hydroxy acid oxidase — —
Dinoroseobacter shibae DFL-12 0.36 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.29 Dshi_2484 FMN-dependent alpha-hydroxy acid dehydrogenase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.25 Ga0059261_2629 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases — —
Variovorax sp. SCN45 0.34 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.33 GFF1422 L-lactate dehydrogenase low > 127
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.30 ABZR86_RS01315 alpha-hydroxy acid oxidase — —
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.26 Xcc-8004.142.1 L-lactate dehydrogenase (EC 1.1.2.3) low > 74
Pseudomonas sp. S08-1 0.32 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.26 OH686_17010 L-lactate dehydrogenase low > 80
Dechlorosoma suillum PS 0.32 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.24 Dsui_1668 alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase low > 51
Pseudomonas putida KT2440 0.31 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.27 PP_4736 L-lactate dehydrogenase low > 96
Sinorhizobium meliloti 1021 0.31 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.30 SMa0404 FMN-dependent dehydrogenase — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.32 ABCV34_RS00430 alpha-hydroxy acid oxidase low > 48
Alteromonas macleodii MIT1002 0.31 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.30 MIT1002_03297 L-lactate dehydrogenase [cytochrome] — —
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.29 Psyr_0908 FMN-dependent alpha-hydroxy acid dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.29 Psyr_0908 FMN-dependent alpha-hydroxy acid dehydrogenase low > 86
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.27 CSW01_19035 alpha-hydroxy-acid oxidizing enzyme low > 62
Rhizobium sp. OAE497 0.30 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein 0.29 ABIE40_RS13790 alpha-hydroxy acid oxidase low > 107
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.29 GFF3626 L-lactate dehydrogenase (EC 1.1.2.3) — —
Pseudomonas simiae WCS417 0.30 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.29 PS417_15625 lactate dehydrogenase low > 88
Ralstonia solanacearum PSI07 0.30 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.30 RPSI07_RS14000 alpha-hydroxy-acid oxidizing protein low > 81
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS02415 cytochrome C550 0.38 BPHYT_RS31690 hypothetical protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.29 PFLU_RS17610 alpha-hydroxy-acid oxidizing protein low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.29 PFLU_RS17610 alpha-hydroxy-acid oxidizing protein low > 109
Escherichia coli ECRC99 0.29 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.28 KEDOAH_12380 lldD quinone-dependent L-lactate dehydrogenase — —
Escherichia coli Nissle 1917 0.29 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.27 ECOLIN_RS20580 quinone-dependent L-lactate dehydrogenase — —
Escherichia coli ECRC98 0.29 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.28 JDDGAC_19395 lldD quinone-dependent L-lactate dehydrogenase low > 86
Escherichia coli ECOR38 0.29 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.27 HEPCGN_14610 lldD quinone-dependent L-lactate dehydrogenase low > 87
Escherichia coli ECRC102 0.29 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.28 NIAGMN_13530 lldD quinone-dependent L-lactate dehydrogenase — —
Escherichia coli ECRC62 0.29 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.28 BNILDI_03865 lldD quinone-dependent L-lactate dehydrogenase low > 75
Paraburkholderia graminis OAS925 0.29 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.32 ABIE53_005317 (S)-mandelate dehydrogenase low > 113
Escherichia coli ECRC100 0.29 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.28 OKFHMN_15770 lldD quinone-dependent L-lactate dehydrogenase low > 80
Escherichia fergusonii Becca 0.29 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 0.28 EFB2_00205 L-lactate dehydrogenase low > 86
Escherichia coli ECOR27 0.29 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.28 NOLOHH_07650 lldD quinone-dependent L-lactate dehydrogenase low > 75
Escherichia coli ECRC101 0.29 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.28 MCAODC_06280 lldD quinone-dependent L-lactate dehydrogenase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 0.28 OHPLBJKB_00094 L-lactate dehydrogenase low > 73
Escherichia coli BW25113 0.29 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 0.28 b3605 lldD L-lactate dehydrogenase, FMN-linked (NCBI) low > 76
Escherichia coli BL21 0.29 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 0.28 ECD_03463 L-lactate dehydrogenase, FMN-linked low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.27 GFF409 L-lactate dehydrogenase (EC 1.1.2.3) low > 78
Rahnella sp. WP5 0.29 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.32 EX31_RS06770 alpha-hydroxy-acid oxidizing protein low > 89
Enterobacter sp. TBS_079 0.29 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.27 MPMX20_00129 L-lactate dehydrogenase low > 85
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.28 Ac3H11_1623 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) — —
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS21530 cytochrome C550 0.28 HSERO_RS12985 L-lactate dehydrogenase low > 78
Variovorax sp. OAS795 0.28 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.31 ABID97_RS24575 alpha-hydroxy acid oxidase low > 91
Enterobacter asburiae PDN3 0.28 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.26 EX28DRAFT_3855 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases low > 76
Pectobacterium carotovorum WPP14 0.28 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA 0.28 HER17_RS20970 FMN-dependent L-lactate dehydrogenase LldD low > 75
Pantoea sp. MT58 0.28 IAI47_13090 serine hydrolase 0.27 IAI47_15020 FMN-dependent L-lactate dehydrogenase LldD low > 76
Agrobacterium fabrum C58 0.28 Atu1499 penicillin binding protein 0.29 Atu3871 L-lactate dehydrogenase low > 89
Serratia liquefaciens MT49 0.27 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.28 IAI46_20620 FMN-dependent L-lactate dehydrogenase LldD low > 86

Not shown: 30 genomes with orthologs for AMB_RS12315 only; 5 genomes with orthologs for AMB_RS22540 only