Conservation of cofitness between AMB_RS17285 and AMB_RS17235 in Magnetospirillum magneticum AMB-1

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Magnetospirillum magneticum AMB-1 1.0 AMB_RS17285 RNA-binding transcriptional accessory protein 1.0 AMB_RS17235 AsmA family protein 0.87 14
Pseudomonas sp. S08-1 0.65 OH686_11100 Transcription accessory protein (S1 RNA-binding domain) 0.08 OH686_14555 A/G-specific adenine glycosylase low > 80
Azospirillum sp. SherDot2 0.64 MPMX19_04277 Protein YhgF 0.08 MPMX19_04911 hypothetical protein low > 112
Pseudomonas stutzeri RCH2 0.64 Psest_3996 Transcriptional accessory protein 0.09 Psest_0146 Uncharacterized protein involved in outer membrane biogenesis low > 67
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS20945 RNA-binding protein 0.05 HSERO_RS24020 hypothetical protein low > 78
Marinobacter adhaerens HP15 0.63 HP15_216 DNA damage response protein (yhgF like) (from data) 0.06 HP15_3014 AsmA family protein low > 73
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_3906 Transcription accessory protein (S1 RNA-binding domain) 0.08 Pf6N2E2_3845 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_11740 DNA damage response protein (yhgF like) (from data) 0.08 AO353_12055 cell envelope biogenesis protein AsmA low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0257 RNA binding S1 0.08 Psyr_4900 AsmA 0.47 53
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0257 RNA binding S1 0.08 Psyr_4900 AsmA low > 86
Pseudomonas sp. RS175 0.62 PFR28_04867 Protein YhgF 0.08 PFR28_04926 hypothetical protein low > 88
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_428 Transcription accessory protein (S1 RNA-binding domain) 0.09 PfGW456L13_365 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 87
Pseudomonas putida KT2440 0.62 PP_0245 putative transcriptional accessory protein 0.08 PP_0287 conserved exported protein of unknown function low > 96
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_10175 transcription accessory protein 0.08 AO356_09825 cell envelope biogenesis protein AsmA low > 104
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS01275 RNA-binding transcriptional accessory protein 0.08 PFLU_RS01595 AsmA family protein low > 109
Pseudomonas fluorescens SBW25 0.62 PFLU_RS01275 RNA-binding transcriptional accessory protein 0.08 PFLU_RS01595 AsmA family protein low > 109
Pantoea sp. MT58 0.62 IAI47_01805 RNA-binding transcriptional accessory protein 0.06 IAI47_06915 outer membrane assembly protein AsmA low > 76
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_1771 Transcription accessory protein (S1 RNA-binding domain) 0.08 Pf1N1B4_1630 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 87
Escherichia coli ECRC101 0.61 MCAODC_07555 yhgF Protein YhgF 0.06 MCAODC_20660 asmA outer membrane assembly protein AsmA low > 87
Escherichia coli ECRC99 0.61 KEDOAH_11115 yhgF Protein YhgF 0.06 KEDOAH_03870 asmA outer membrane assembly protein AsmA — —
Escherichia coli ECRC100 0.61 OKFHMN_17025 yhgF Protein YhgF 0.06 OKFHMN_24280 asmA outer membrane assembly protein AsmA 0.78 13
Serratia liquefaciens MT49 0.61 IAI46_23800 RNA-binding transcriptional accessory protein 0.06 IAI46_07985 outer membrane assembly protein AsmA low > 86
Escherichia coli ECRC98 0.61 JDDGAC_20655 yhgF Protein YhgF 0.06 JDDGAC_28390 asmA outer membrane assembly protein AsmA low > 86
Escherichia coli ECRC102 0.61 NIAGMN_14795 yhgF Protein YhgF 0.06 NIAGMN_22225 asmA outer membrane assembly protein AsmA — —
Escherichia coli Nissle 1917 0.61 ECOLIN_RS19465 Tex family protein 0.07 ECOLIN_RS12150 outer membrane assembly protein AsmA — —
Escherichia coli ECOR27 0.61 NOLOHH_08815 yhgF Protein YhgF 0.06 NOLOHH_15620 asmA outer membrane assembly protein AsmA low > 75
Escherichia coli ECRC62 0.61 BNILDI_02705 yhgF Protein YhgF 0.06 BNILDI_14530 asmA outer membrane assembly protein AsmA low > 75
Escherichia coli BL21 0.61 ECD_03259 putative transcriptional accessory protein 0.06 ECD_01970 suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_00296 Protein YhgF 0.06 OHPLBJKB_01642 hypothetical protein low > 73
Escherichia coli ECOR38 0.61 HEPCGN_15835 yhgF Protein YhgF 0.06 HEPCGN_02980 asmA outer membrane assembly protein AsmA low > 87
Escherichia coli BW25113 0.61 b3407 yhgF orf, hypothetical protein (VIMSS) 0.06 b2064 asmA predicted assembly protein (NCBI) low > 76
Dickeya dadantii 3937 0.61 DDA3937_RS19635 RNA-binding transcriptional accessory protein 0.07 DDA3937_RS06700 outer membrane assembly protein AsmA low > 74
Escherichia fergusonii Becca 0.61 EFB2_00421 Protein YhgF 0.06 EFB2_01790 hypothetical protein low > 86
Dickeya dianthicola ME23 0.61 DZA65_RS20860 RNA-binding transcriptional accessory protein 0.07 DZA65_RS07070 outer membrane assembly protein AsmA low > 75
Pectobacterium carotovorum WPP14 0.61 HER17_RS01615 RNA-binding transcriptional accessory protein 0.06 HER17_RS14640 outer membrane assembly protein AsmA low > 75
Dickeya dianthicola 67-19 0.61 HGI48_RS19770 RNA-binding transcriptional accessory protein 0.07 HGI48_RS06715 outer membrane assembly protein AsmA low > 71
Lysobacter sp. OAE881 0.60 ABIE51_RS00300 Tex family protein 0.06 ABIE51_RS16235 AsmA family protein low > 62
Rahnella sp. WP5 0.60 EX31_RS04840 RNA-binding transcriptional accessory protein 0.06 EX31_RS11535 outer membrane assembly protein AsmA low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF611 Transcription accessory protein (S1 RNA-binding domain) 0.06 GFF3863 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 78
Rhodopseudomonas palustris CGA009 0.58 TX73_003025 Tex family protein 0.13 TX73_021550 AsmA family protein low > 86
Shewanella loihica PV-4 0.58 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) 0.17 Shew_2116 AsmA family protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.57 Sama_3508 hypothetical protein (RefSeq) 0.15 Sama_1887 AsmA protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.56 SO4629 conserved hypothetical protein (NCBI ptt file) 0.14 SO2566 asmA asmA protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_4013 RNA-binding S1 domain-containing protein (RefSeq) 0.14 Shewana3_2372 AsmA protein (RefSeq) low > 73
Phaeobacter inhibens DSM 17395 0.55 PGA1_c09850 S1 domain-containing protein 0.10 PGA1_c24350 Uncharacterized protein involved in outer membrane biogenesis low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.41 DVU2246 S1 RNA binding domain protein (TIGR) 0.08 DVU0815 AsmA family protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_0870 RNA binding S1 domain protein (RefSeq) 0.08 DvMF_2863 AsmA family protein (RefSeq) low > 51

Not shown: 47 genomes with orthologs for AMB_RS17285 only; 1 genomes with orthologs for AMB_RS17235 only