| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS11235 | | AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor | 1.0 | ABZR87_RS08110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.62 | 12 |
| Ralstonia solanacearum PSI07 | 0.86 | RPSI07_RS17650 | | RND transporter | 0.82 | RPSI07_RS21110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.85 | RALBFv3_RS15705 | | RND transporter | 0.83 | RALBFv3_RS12220 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.81 | RS_RS06485 | | outer membrane CHANEL lipoprotein | 0.81 | RS_RS02925 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS12820 | | RND transporter | 0.56 | RR42_RS03245 | | D-alanyl-D-alanine carboxypeptidase | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS23075 | | efflux transporter outer membrane subunit | 0.46 | QEN71_RS02470 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_002456 | | NodT family efflux transporter outer membrane factor (OMF) lipoprotein | 0.46 | ABIE53_003419 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_01551 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | 0.46 | H281DRAFT_04181 | | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS08095 | | MarR family transcriptional regulator | 0.47 | BPHYT_RS16225 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS13565 | | MarR family transcriptional regulator | 0.33 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | 0.23 | 33 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_2350 | | Outer membrane component of tripartite multidrug resistance system | 0.29 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 79 |
| Variovorax sp. SCN45 | 0.33 | GFF4769 | | Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system | 0.30 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.47 | 12 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS20400 | | efflux transporter outer membrane subunit | 0.29 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF3755 | | Outer membrane component of tripartite multidrug resistance system | 0.28 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 90 |
| Enterobacter asburiae PDN3 | 0.30 | EX28DRAFT_2613 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | 0.11 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.30 | ABZR86_RS14775 | | efflux transporter outer membrane subunit | 0.10 | ABZR86_RS00485 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_1216 | | Outer membrane component of tripartite multidrug resistance system | 0.29 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_01035 | | multidrug RND transporter | 0.31 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | low | > 104 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_02749 | | Toluene efflux pump outer membrane protein TtgF | 0.31 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS18905 | | efflux transporter outer membrane subunit | 0.31 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS18905 | | efflux transporter outer membrane subunit | 0.31 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.29 | Pf6N2E2_147 | | Outer membrane component of tripartite multidrug resistance system | 0.31 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_27850 | | multidrug RND transporter | 0.31 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_2604 | | Outer membrane component of tripartite multidrug resistance system | 0.29 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_16920 | | multidrug RND transporter | 0.31 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | low | > 88 |
| Pseudomonas putida KT2440 | 0.28 | PP_1263 | | putative Fusaric acid resistance protein | 0.31 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | low | > 96 |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS05940 | | efflux transporter outer membrane subunit | 0.24 | ABCV34_RS15375 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 48 |
| Pseudomonas syringae pv. syringae B728a | 0.23 | Psyr_1045 | | RND efflux system, outer membrane lipoprotein, NodT | 0.30 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.23 | Psyr_1045 | | RND efflux system, outer membrane lipoprotein, NodT | 0.30 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.22 | GFF3807 | | RND efflux system, outer membrane lipoprotein, NodT family | 0.12 | GFF2924 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 78 |
| Escherichia coli ECRC100 | 0.21 | OKFHMN_12765 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.12 | OKFHMN_18040 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 80 |
| Escherichia coli ECRC101 | 0.21 | MCAODC_03275 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.12 | MCAODC_08560 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Escherichia coli ECRC98 | 0.21 | JDDGAC_16400 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.12 | JDDGAC_21665 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 86 |
| Escherichia coli ECRC102 | 0.21 | NIAGMN_10610 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.12 | NIAGMN_15800 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECOR27 | 0.21 | NOLOHH_15165 | mdtQ | multidrug resistance outer membrane protein MdtQ | 0.12 | NOLOHH_09840 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli ECRC62 | 0.21 | BNILDI_14115 | mdtQ | multidrug resistance outer membrane protein MdtQ | 0.12 | BNILDI_01695 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli BL21 | 0.21 | ECD_03952 | | outer membrane factor of efflux pump | 0.12 | ECD_03047 | | D-alanyl-D-alanine carboxypeptidase | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.21 | OHPLBJKB_01572 | | Solvent efflux pump outer membrane protein SrpC | 0.12 | OHPLBJKB_00518 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 73 |
| Escherichia coli BW25113 | 0.21 | b4080 | yjcP | predicted outer membrane factor of efflux pump (NCBI) | 0.12 | b3182 | dacB | D-alanyl-D-alanine carboxypeptidase (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.21 | KEDOAH_04560 | mdtQ | multidrug resistance outer membrane protein MdtQ | 0.12 | KEDOAH_10110 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Klebsiella michiganensis M5al | 0.21 | BWI76_RS19540 | | multidrug transporter permease | 0.12 | BWI76_RS25165 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 92 |
| Escherichia coli ECOR38 | 0.21 | HEPCGN_11395 | mdtP | multidrug efflux transporter outer membrane subunit MdtP | 0.12 | HEPCGN_16915 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Escherichia fergusonii Becca | 0.20 | EFB2_04503 | | Cation efflux system protein CusC | 0.12 | EFB2_00641 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 86 |
| Escherichia coli Nissle 1917 | 0.20 | ECOLIN_RS23635 | | multidrug efflux transporter outer membrane subunit MdtP | 0.12 | ECOLIN_RS18325 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 55 |
| Rahnella sp. WP5 | 0.20 | EX31_RS13650 | | efflux transporter outer membrane subunit | 0.11 | EX31_RS08600 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 89 |
| Enterobacter sp. TBS_079 | 0.20 | MPMX20_03107 | | Antibiotic efflux pump outer membrane protein ArpC | 0.11 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 85 |
| Serratia liquefaciens MT49 | 0.19 | IAI46_19995 | | efflux transporter outer membrane subunit | 0.11 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 86 |
Not shown: 8 genomes with orthologs for ABZR87_RS11235 only; 16 genomes with orthologs for ABZR87_RS08110 only