| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dyella japonica UNC79MFTsu3.2 | 1.0 | ABZR86_RS16925 | | 2Fe-2S iron-sulfur cluster-binding protein | 1.0 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.42 | 13 |
| Rhodanobacter sp. FW510-T8 | 0.76 | OKGIIK_16740 | | NAD(P)H-flavin reductase | 0.78 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.74 | LRK54_RS06890 | | 2Fe-2S iron-sulfur cluster-binding protein | 0.80 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.74 | LRK55_RS06635 | | 2Fe-2S iron-sulfur cluster-binding protein | 0.80 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 63 |
| Herbaspirillum seropedicae SmR1 | 0.40 | HSERO_RS16665 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.36 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS12725 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.42 | RPSI07_RS15970 | | RluA family pseudouridine synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS00280 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.41 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.63 | 27 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS12220 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.42 | RS_RS08205 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS04660 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.41 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS09010 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.41 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF1029 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like | 0.36 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS06165 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.33 | ABCV34_RS01885 | | RluA family pseudouridine synthase | low | > 48 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_1936 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like | 0.49 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3787 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like | 0.36 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 79 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_30365 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.50 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Variovorax sp. SCN45 | 0.35 | GFF6028 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like | 0.36 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 127 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS07865 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.35 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Agrobacterium fabrum C58 | 0.28 | Atu1196 | | naphthalene 1,2-dioxygenase | 0.35 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.27 | GFF3891 | | CDP-6-deoxy-delta-3,4-glucoseen reductase-like | 0.50 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_0425 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases | 0.39 | Ga0059261_0664 | | pseudouridine synthase, RluA family | low | > 68 |
| Pseudomonas simiae WCS417 | 0.27 | PS417_08245 | | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase | 0.50 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Acinetobacter radioresistens SK82 | 0.26 | MPMX26_00904 | | Phenol hydroxylase P5 protein | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Alteromonas macleodii MIT1002 | 0.25 | MIT1002_02092 | | Phenol hydroxylase P5 protein | 0.55 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Pseudomonas putida KT2440 | 0.24 | PP_5212 | | Oxidoreductase, iron-sulfur-binding | 0.53 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Azospirillum sp. SherDot2 | 0.24 | MPMX19_03563 | | Propane 2-monooxygenase, reductase component | 0.35 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Pseudomonas sp. RS175 | 0.23 | PFR28_04335 | | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase | 0.49 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.23 | Pf1N1B4_2218 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like | 0.49 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens SBW25 | 0.23 | PFLU_RS29020 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.50 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.23 | PFLU_RS29020 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.50 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Marinobacter adhaerens HP15 | 0.23 | HP15_4029 | | oxidoreductase FAD/NAD(P)-binding domain protein | 0.52 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Pseudomonas fluorescens FW300-N2E3 | 0.23 | AO353_08835 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | 0.49 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.23 | Psyr_0303 | | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein | 0.49 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.23 | Psyr_0303 | | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein | 0.49 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.22 | PfGW456L13_885 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like | 0.50 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas sp. S08-1 | 0.21 | OH686_11255 | | ase-related protein | 0.51 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.20 | Psest_3727 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases | 0.50 | Psest_0709 | | pseudouridine synthase, RluA family | low | > 67 |
| Bacteroides ovatus ATCC 8483 | 0.14 | BACOVA_04025 | | NADH:ubiquinone oxidoreductase, F subunit | 0.31 | BACOVA_03528 | | pseudouridine synthase, RluA family | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.14 | BT1155 | | Na+-translocating NADH-quinone reductase subunit (NCBI ptt file) | 0.31 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.14 | HMPREF1181_RS16895 | | NADH:ubiquinone reductase (Na(+)-transporting) subunit F | 0.32 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.13 | ABI39_RS16895 | | NADH:ubiquinone reductase (Na(+)-transporting) subunit F | 0.32 | ABI39_RS02845 | | RluA family pseudouridine synthase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.13 | HMPREF1058_RS04310 | | NADH:ubiquinone reductase (Na(+)-transporting) subunit F | 0.32 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.11 | Echvi_0762 | | NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit | 0.35 | Echvi_0642 | | pseudouridine synthase, RluA family | — | — |
| Parabacteroides merdae CL09T00C40 | 0.11 | HMPREF1078_RS02260 | | NADH:ubiquinone reductase (Na(+)-transporting) subunit F | 0.30 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | — | — |
Not shown: 5 genomes with orthologs for ABZR86_RS16925 only; 51 genomes with orthologs for ABZR86_RS10965 only