Conservation of cofitness between Sama_0886 and Sama_2119 in Shewanella amazonensis SB2B

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0886 hypothetical protein (RefSeq) 1.0 Sama_2119 putative periplasmic protease (RefSeq) 0.36 7
Shewanella sp. ANA-3 0.81 Shewana3_3020 hypothetical protein (RefSeq) 0.75 Shewana3_1530 putative periplasmic protease (RefSeq) low > 73
Shewanella oneidensis MR-1 0.81 SO1354 hemolysin protein, putative (NCBI ptt file) 0.72 SO_2933 putative periplasmic protease (RefSeq) low > 76
Shewanella loihica PV-4 0.80 Shew_1060 hypothetical protein (RefSeq) 0.73 Shew_2407 putative periplasmic protease (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_02980 HlyC/CorC family transporter 0.55 CSW01_05395 protease SohB low > 62
Alteromonas macleodii MIT1002 0.65 MIT1002_01294 Hemolysin C 0.52 MIT1002_01969 putative protease SohB low > 70
Klebsiella michiganensis M5al 0.63 BWI76_RS21540 membrane protein 0.52 BWI76_RS11915 protease SohB 0.21 86
Klebsiella pneumoniae MKP103 0.62 KDGMDA_02235 magnesium/cobalt efflux protein 0.49 KDGMDA_19605 protease SohB low > 95
Pantoea sp. MT58 0.62 IAI47_04360 HlyC/CorC family transporter 0.52 IAI47_09225 protease SohB low > 76
Erwinia amylovora T8 0.61 OLJFJH_09640 magnesium/cobalt efflux protein 0.53 OLJFJH_13520 protease SohB low > 58
Enterobacter sp. TBS_079 0.61 MPMX20_03482 hypothetical protein 0.52 MPMX20_02504 putative protease SohB low > 85
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2715 Putative Mg2+ and Co2+ transporter CorB 0.52 EX28DRAFT_0943 Periplasmic serine proteases (ClpP class) low > 76
Erwinia tracheiphila SCR3 0.61 LU632_RS15680 HlyC/CorC family transporter 0.53 LU632_RS12720 sohB protease SohB low > 74
Escherichia coli ECOR38 0.61 HEPCGN_20280 yfjD UPF0053 inner membrane protein YfjD 0.54 HEPCGN_25585 sohB protease SohB low > 88
Escherichia fergusonii Becca 0.61 EFB2_01280 hypothetical protein 0.53 EFB2_02655 putative protease SohB low > 86
Rahnella sp. WP5 0.61 EX31_RS07740 HlyC/CorC family transporter 0.56 EX31_RS09905 protease SohB low > 89
Escherichia coli ECOR27 0.61 NOLOHH_12835 yfjD UPF0053 inner membrane protein YfjD 0.53 NOLOHH_20280 sohB protease SohB low > 76
Erwinia tracheiphila HP pepo 2.2 0.61 IJEDHG_01545 UPF0053 inner membrane protein YfjD 0.52 IJEDHG_23565 sohB protease SohB low > 61
Escherichia coli ECRC62 0.61 BNILDI_11640 yfjD UPF0053 inner membrane protein YfjD 0.53 BNILDI_18430 sohB protease SohB low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF4166 Hemolysins and related proteins containing CBS domains 0.52 GFF2716 Possible protease sohB (EC 3.4.21.-) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_01094 hypothetical protein 0.54 OHPLBJKB_02412 putative protease SohB low > 74
Escherichia coli ECRC98 0.61 JDDGAC_24825 yfjD UPF0053 inner membrane protein YfjD 0.54 JDDGAC_05160 sohB protease SohB low > 87
Escherichia coli ECRC99 0.61 KEDOAH_07060 yfjD UPF0053 inner membrane protein YfjD 0.54 KEDOAH_26150 sohB protease SohB
Escherichia coli ECRC100 0.61 OKFHMN_21160 yfjD UPF0053 inner membrane protein YfjD 0.54 OKFHMN_02615 sohB protease SohB
Escherichia coli ECRC102 0.60 NIAGMN_18930 yfjD UPF0053 inner membrane protein YfjD 0.54 NIAGMN_26785 sohB protease SohB low > 80
Serratia liquefaciens MT49 0.60 IAI46_03905 HlyC/CorC family transporter 0.52 IAI46_13980 protease SohB low > 86
Escherichia coli BW25113 0.60 b4461 yfjD predicted inner membrane protein (RefSeq) 0.54 b1272 sohB predicted inner membrane peptidase (NCBI) low > 76
Escherichia coli Nissle 1917 0.60 ECOLIN_RS14760 HlyC/CorC family transporter 0.54 ECOLIN_RS07655 protease SohB
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13505_RS16605 DUF21 domain-containing protein 0.53 PagCFBP13505_RS06960 protease SohB low > 74
Escherichia coli BL21 0.58 ECD_02501 UPF0053 family inner membrane protein 0.54 ECD_01248 inner membrane protein, S49 peptidase family protein low > 61
Marinobacter adhaerens HP15 0.57 HP15_755 Mg2+ and Co2+ transporter CorB 0.47 HP15_1798 sohB protein, peptidase U7 family low > 73
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_2258 Putative Mg2+ and Co2+ transporter CorB 0.47 B158DRAFT_2210 Periplasmic serine proteases (ClpP class) low > 40
Pseudomonas segetis P6 0.52 MPMX49_01566 hypothetical protein 0.47 MPMX49_02792 putative protease SohB low > 75
Pseudomonas stutzeri RCH2 0.52 Psest_3136 Putative Mg2+ and Co2+ transporter CorB 0.49 Psest_2085 Periplasmic serine proteases (ClpP class) low > 67
Pseudomonas aeruginosa PA14 0.35 IKLFDK_19135 magnesium/cobalt efflux protein 0.48 IKLFDK_08910 protease SohB 0.41 32
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_876 Magnesium and cobalt efflux protein CorC 0.51 Pf1N1B4_5668 Peptidase, U7 family low > 87
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1713 Magnesium and cobalt efflux protein CorC 0.50 PfGW456L13_2840 Peptidase, U7 family low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_1279 CBS:Transporter-associated region 0.49 Psyr_2460 inner membrane peptidase, Serine peptidase, MEROPS family S49 low > 86
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_1279 CBS:Transporter-associated region 0.49 Psyr_2460 inner membrane peptidase, Serine peptidase, MEROPS family S49 low > 86
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_06420 transporter 0.50 AO356_00565 peptidase low > 104
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_04400 transporter 0.49 AO353_22785 peptidase low > 101
Pseudomonas sp. SVBP6 0.26 COO64_RS04865 transporter associated domain-containing protein 0.47 COO64_RS24880 sohB protease SohB low > 93
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_3152 Magnesium and cobalt efflux protein CorC 0.51 Pf6N2E2_2075 Peptidase, U7 family low > 103
Pseudomonas putida KT2440 0.26 PP_1459 CBS domain protein 0.51 PP_3922 putative inner membrane peptidase low > 96
Pseudomonas sp. BP01 0.25 JOY50_RS11660 transporter associated domain-containing protein 0.50 JOY50_RS03980 sohB protease SohB low > 84
Pseudomonas sp. DMC3 0.25 GFF1979 hypothetical protein 0.49 GFF3694 putative protease SohB 0.76 4
Pseudomonas simiae WCS417 0.25 PS417_22935 hypothetical protein 0.50 PS417_12020 peptidase low > 88
Pseudomonas lactucae CFBP13502 0.25 GEMAOFIL_04736 hypothetical protein 0.52 GEMAOFIL_03380 putative protease SohB low > 93
Pseudomonas sp. RS175 0.25 PFR28_00324 hypothetical protein 0.49 PFR28_01364 putative protease SohB low > 88
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS24595 DUF21 domain-containing protein 0.50 PFLU_RS12770 protease SohB low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS24595 DUF21 domain-containing protein 0.50 PFLU_RS12770 protease SohB low > 109

Not shown: 27 genomes with orthologs for Sama_0886 only; 6 genomes with orthologs for Sama_2119 only