| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_04424 | | Phyllosphere-induced regulator PhyR | insig. | 100 | 100 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS21690 | | regulator | insig. | 75 | 97 |
| | Azospirillum brasilense Sp245 | AZOBR_RS06745 | | regulator | insig. | 49 | 96 |
| | Azospirillum sp. SherDot2 | MPMX19_01090 | | Phyllosphere-induced regulator PhyR | insig. | 48 | 96 |
| o | Bosea sp. OAE506 | ABIE41_RS04085 | | response regulator | sig. | 37 | 91 |
| o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS14785 | | response regulator | strong | 36 | 95 |
| o | Rhizobium sp. OAE497 | ABIE40_RS14460 | | response regulator | strong | 33 | 91 |
| o | Sinorhizobium meliloti 1021 | SMc00794 | | two-component response regulator | strong | 35 | 91 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c27080 | | response regulator receiver protein | insig. | 36 | 93 |
| o | Sphingobium sp. HT1-2 | GFF2319 | | DNA-directed RNA polymerase specialized sigma subunit, sigma24-like | cofit | 38 | 91 |
| o | Rhodospirillum rubrum S1H | Rru_A3285 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 35 | 94 |
| | Sinorhizobium meliloti 1021 | SMc01504 | | two-component response regulator | strong | 33 | 91 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3490 | | Response regulator receiver domain/Sigma-70, region 4 | strong | 37 | 92 |
| o | Xanthobacter sp. DMC5 | GFF2318 | | Phyllosphere-induced regulator PhyR | insig. | 33 | 96 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_3837 | | response regulator receiver and SARP domain protein (RefSeq) | insig. | 36 | 93 |
| o | Caulobacter crescentus NA1000 | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | strong | 36 | 91 |
| o | Caulobacter crescentus NA1000 Δfur | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | cofit | 36 | 91 |
| o | Agrobacterium fabrum C58 | Atu4162 | | two-component response regulator | strong | 35 | 91 |
| | Rhodopseudomonas palustris CGA009 | TX73_021890 | | response regulator | cofit | 33 | 92 |
| | Azospirillum sp. SherDot2 | MPMX19_02869 | | Sensor histidine kinase TmoS | insig. | 38 | 44 |
| | Azospirillum sp. SherDot2 | MPMX19_06040 | | Phyllosphere-induced regulator PhyR | insig. | 39 | 47 |
| | Azospirillum sp. SherDot2 | MPMX19_04973 | | hypothetical protein | insig. | 43 | 38 |
| | Azospirillum brasilense Sp245 | AZOBR_RS07605 | | regulator | strong | 39 | 41 |
| | Azospirillum brasilense Sp245 | AZOBR_RS25995 | | regulator | strong | 38 | 41 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS01555 | | response regulator | insig. | 37 | 46 |
| | Rhizobium sp. OAE497 | ABIE40_RS30650 | | response regulator | insig. | 39 | 41 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS00670 | | response regulator | no data | 37 | 44 |
| | Rhizobium sp. OAE497 | ABIE40_RS27485 | | response regulator | insig. | 38 | 42 |
| | Rhizobium sp. OAE497 | ABIE40_RS24250 | | response regulator | insig. | 38 | 42 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2677 | | response regulator receiver sensor hybrid histidine kinase (RefSeq) | sig. | 35 | 43 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS06080 | | response regulator transcription factor | insig. | 31 | 44 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0681 | | sensor histidine kinase/response regulator (TIGR) | strong | 35 | 47 |
| | Bosea sp. OAE506 | ABIE41_RS00485 | | response regulator | insig. | 36 | 46 |
| | Mycobacterium tuberculosis H37Rv | Rv1626 | | Probable two-component system transcriptional regulator | strong | 36 | 42 |
| | Rhizobium sp. OAE497 | ABIE40_RS22785 | | response regulator | insig. | 37 | 47 |
| | Agrobacterium fabrum C58 | Atu5378 | | two component response regulator | no data | 37 | 41 |
| | Rhizobium sp. OAE497 | ABIE40_RS20270 | | response regulator | insig. | 38 | 42 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0933 | | response regulator (TIGR) | insig. | 38 | 40 |
| | Alteromonas macleodii MIT1002 | MIT1002_01389 | | KDP operon transcriptional regulatory protein KdpE | cofit | 38 | 43 |
| | Rhizobium sp. OAE497 | ABIE40_RS30880 | | hypothetical protein | insig. | 39 | 37 |
| | Rhodopseudomonas palustris CGA009 | TX73_005095 | | HWE histidine kinase domain-containing protein | insig. | 34 | 42 |
| | Agrobacterium fabrum C58 | Atu4671 | | response regulator | insig. | 35 | 42 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0505 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 31 | 43 |
| | Caulobacter crescentus NA1000 | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 34 | 41 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 34 | 41 |
| | Cellulophaga baltica 18 | M666_RS12540 | | sigma 54-interacting response regulator | insig. | 37 | 30 |
| | Rhizobium sp. OAE497 | ABIE40_RS26630 | | response regulator | insig. | 39 | 42 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1054 | | diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | insig. | 31 | 43 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1141 | | Response regulator of the LytR/AlgR family | no data | 29 | 39 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2154 | | Response regulator of the LytR/AlgR family | insig. | 27 | 49 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0714 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 36 | 40 |
| | Variovorax sp. SCN45 | GFF215 | | RNA polymerase sigma-54 factor RpoN | insig. | 34 | 49 |
| | Cellulophaga baltica 18 | M666_RS13715 | | response regulator | strong | 29 | 42 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1374 | | putative PAS/PAC sensor protein (RefSeq) | sig. | 44 | 30 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0208 | | Response regulator receiver domain | strong | 37 | 41 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31670 | | hypothetical protein | insig. | 36 | 42 |
| | Azospirillum sp. SherDot2 | MPMX19_01131 | | hypothetical protein | no data | 36 | 41 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2537 | | PAS/PAC sensor hybrid histidine kinase (RefSeq) | strong | 35 | 40 |
| | Pseudomonas orientalis W4I3 | QF045_RS16060 | | response regulator | no data | 34 | 42 |
| | Rhizobium sp. OAE497 | ABIE40_RS27445 | | response regulator | insig. | 33 | 45 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19190 | | DNA-binding response regulator | insig. | 31 | 43 |
| | Sphingobium sp. HT1-2 | GFF2215 | | Two-component system sensor histidine kinase | cofit | 34 | 42 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0013 | | Signal transduction histidine kinase | no data | 30 | 46 |
| | Xanthobacter sp. DMC5 | GFF1825 | | Sensor histidine kinase RcsC | insig. | 35 | 53 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2933 | | response regulator/sensory box/HDIG domain protein (TIGR) | strong | 33 | 43 |
| | Azospirillum sp. SherDot2 | MPMX19_04245 | | hypothetical protein | insig. | 32 | 42 |
| | Rhodospirillum rubrum S1H | Rru_A0694 | | Response regulator receiver (CheY) and unknown domain protein (NCBI) | insig. | 41 | 30 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS18990 | | response regulator | insig. | 38 | 42 |
| | Rhodospirillum rubrum S1H | Rru_A1788 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 37 | 37 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1493 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | insig. | 36 | 43 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS23005 | | sigma-70 family RNA polymerase sigma factor | insig. | 32 | 51 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02960 | | Response regulator receiver protein CpdR | cofit | 33 | 42 |
| | Caulobacter crescentus NA1000 | CCNA_02967 | | PAS-family sensor histidine kinase | cofit | 31 | 57 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02967 | | PAS-family sensor histidine kinase | insig. | 31 | 57 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1460 | | putative PAS/PAC sensor protein (RefSeq) | cofit | 30 | 45 |
| | Xanthobacter sp. DMC5 | GFF4373 | | Transcriptional regulatory protein OmpR | insig. | 39 | 38 |
| | Azospirillum brasilense Sp245 | AZOBR_RS16625 | | regulator | insig. | 35 | 30 |
| | Cellulophaga baltica 18 | M666_RS18600 | | response regulator | sig. | 34 | 32 |
| | Pseudomonas segetis P6 | MPMX49_00446 | | Sensor histidine kinase RcsC | insig. | 31 | 47 |
| | Sphingobium sp. HT1-2 | GFF4974 | | hypothetical protein | cofit | 35 | 45 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS08240 | | RNA polymerase subunit sigma-24 | sig. | 34 | 51 |
| | Variovorax sp. OAS795 | ABID97_RS16445 | | sigma-70 family RNA polymerase sigma factor | no data | 31 | 46 |
| | Rhizobium sp. OAE497 | ABIE40_RS11455 | | RNA polymerase sigma factor | insig. | 30 | 53 |
| | Lysobacter sp. OAE881 | ABIE51_RS09905 | | ATP-binding protein | insig. | 30 | 52 |
| | Sphingobium sp. HT1-2 | GFF3119 | | putative sensory transduction regulatory protein | cofit | 35 | 42 |
| | Pseudomonas simiae WCS417 | PS417_13885 | | chemotaxis protein CheY | sig. | 32 | 42 |
| | Sinorhizobium meliloti 1021 | SMa0114 | | two-component response regulator | cofit | 32 | 42 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | cofit | 37 | 44 |
| | Azospirillum sp. SherDot2 | MPMX19_00465 | | putative transcriptional regulatory protein pdtaR | insig. | 33 | 42 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2428.1 | | Two-component system regulatory protein | sig. | 31 | 42 |
| | Pectobacterium carotovorum WPP14 | HER17_RS15050 | | two-component system response regulator KdpE | cofit | 40 | 34 |
| | Bosea sp. OAE506 | ABIE41_RS24110 | | response regulator | insig. | 40 | 46 |
| | Rahnella sp. WP5 | EX31_RS01180 | | two-component system response regulator DcuR | insig. | 37 | 42 |
| | Pseudomonas putida KT2440 | PP_3364 | | Response regulator | insig. | 31 | 45 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02812 | | Sensor histidine kinase RcsC | cofit | 29 | 43 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | strong | 35 | 44 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS07010 | | RNA polymerase sigma factor | no data | 32 | 51 |
| | Ralstonia solanacearum UW163 | UW163_RS06605 | | RNA polymerase sigma factor | no data | 32 | 51 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS14730 | | response regulator | insig. | 32 | 42 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS14730 | | response regulator | strong | 32 | 42 |