Homologs of HMPREF1181_RS13000 from Bacteroides stercoris CC31F

RNA polymerase sigma factor
SEED: RNA polymerase ECF-type sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Bacteroides thetaiotaomicron VPI-5482 BT1103 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 100 100
  Bacteroides stercoris CC31F HMPREF1181_RS13000 RNA polymerase sigma factor sig. 100 100
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS08195 RNA polymerase sigma factor insig. 100 100
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05410 RNA polymerase sigma factor strong 43 85
  Bacteroides stercoris CC31F HMPREF1181_RS16950 RNA polymerase sigma factor strong 48 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12805 RNA polymerase sigma factor strong 48 85
  Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 47 85
  Bacteroides ovatus ATCC 8483 BACOVA_02205 Sigma-70 region 2 insig. 47 85
  Bacteroides thetaiotaomicron VPI-5482 BT2569 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 48 85
  Bacteroides thetaiotaomicron VPI-5482 BT3457 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 47 85
  Phocaeicola dorei CL03T12C01 ABI39_RS17450 RNA polymerase sigma factor strong 47 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03770 RNA polymerase sigma factor strong 47 85
  Bacteroides stercoris CC31F HMPREF1181_RS02840 RNA polymerase sigma factor sig. 47 85
  Bacteroides ovatus ATCC 8483 BACOVA_01848 Sigma-70 region 2 strong 47 85
  Bacteroides thetaiotaomicron VPI-5482 BT1197 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 47 85
  Bacteroides ovatus ATCC 8483 BACOVA_03979 Sigma-70 region 2 strong 45 85
  Bacteroides thetaiotaomicron VPI-5482 BT2383 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 49 84
  Bacteroides ovatus ATCC 8483 BACOVA_02602 Sigma-70 region 2 insig. 55 61
  Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 38 84
  Bacteroides thetaiotaomicron VPI-5482 BT1572 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 36 84
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_10915 RNA polymerase subunit sigma strong 38 84
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15765 RNA polymerase sigma factor strong 37 85
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16550 RNA polymerase sigma factor strong 32 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11995 RNA polymerase subunit sigma insig. 33 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24230 RNA polymerase sigma factor strong 33 84
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1476 RNA polymerase sigma factor, sigma-70 family insig. 33 84
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 43 46
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 34 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 26 84
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 39 44
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 32 80
  Rhizobium sp. OAE497 ABIE40_RS21790 sigma-70 family RNA polymerase sigma factor cofit 29 87
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 41 46
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12270 RNA polymerase subunit sigma insig. 40 45
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 36 50
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 32 49
  Mycobacterium tuberculosis H37Rv Rv3223c Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) insig. 32 75
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 25 84
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 38 49
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 38 46
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 29 74
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 33 46
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 32 50
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 30 83
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 30 83
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 36 40
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 35 45
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 27 81
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05043 RNA polymerase sigma-70 factor, ECF subfamily no data 26 83
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 36 44
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 31 76
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 28 73
  Pantoea sp. MT58 IAI47_21640 sigma-70 family RNA polymerase sigma factor insig. 28 72
  Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 26 81
  Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 26 81
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 37 39
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 29 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1738 RNA polymerase sigma-54 factor RpoN insig. 29 73
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 33 48
  Bifidobacterium breve UCC2003 BBR_RS16820 RNA polymerase sigma factor RpoE strong 33 71
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 27 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS32245 RNA polymerase sigma factor insig. 31 83
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 29 73
  Bacteroides stercoris CC31F HMPREF1181_RS00820 RNA polymerase sigma-70 factor insig. 28 77
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 32 48
  Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 31 72
  Paraburkholderia sabiae LMG 24235 QEN71_RS36705 RNA polymerase sigma factor insig. 26 84
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 29 44
  Agrobacterium fabrum C58 Atu5490 ECF family RNA polymerase sigma factor insig. 39 38
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 32 46
  Rhizobium sp. OAE497 ABIE40_RS03400 RNA polymerase sigma factor insig. 27 69
  Serratia liquefaciens MT49 IAI46_22980 RNA polymerase sigma factor insig. 25 75
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1191 RNA polymerase sigma factor, sigma-70 family insig. 30 65
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 34 44
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 34 44
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 31 49
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 28 48
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 33 68
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 28 48
  Variovorax sp. OAS795 ABID97_RS16825 sigma-70 family RNA polymerase sigma factor insig. 30 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 28 48
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00075 RNA polymerase sigma factor insig. 27 71
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 36 39
  Caulobacter crescentus NA1000 CCNA_03362 ECF-family RNA polymerase sigma factor strong 31 78
  Caulobacter crescentus NA1000 Δfur CCNA_03362 ECF-family RNA polymerase sigma factor cofit 31 78
  Azospirillum sp. SherDot2 MPMX19_05043 hypothetical protein insig. 28 38
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01554 RNA polymerase sigma-70 factor, ECF subfamily insig. 24 74
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12120 RNA polymerase sigma factor sig. 30 56
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16675 hypothetical protein insig. 30 71
  Sinorhizobium meliloti 1021 SMc02713 RNA polymerase sigma-E factor (sigma-24) protein strong 28 57
  Phaeobacter inhibens DSM 17395 PGA1_78p00070 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' no data 27 52
  Mycobacterium tuberculosis H37Rv Rv0735 Probable alternative RNA polymerase sigma factor SigL insig. 32 38
  Burkholderia phytofirmans PsJN BPHYT_RS34725 RNA polymerase sigma factor no data 31 66
  Sinorhizobium meliloti 1021 SMc04051 RNA polymerase sigma-E factor (sigma-24) protein insig. 31 36
  Phocaeicola dorei CL03T12C01 ABI39_RS04680 RNA polymerase sigma factor insig. 30 56
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 30 40
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 29 71
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 28 48
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 25 74
  Paraburkholderia graminis OAS925 ABIE53_004659 RNA polymerase sigma-70 factor (TIGR02943 family) insig. 31 69