Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Variovorax sp. SCN45 | GFF4149 | | hypothetical protein | insig. | 100 | 100 |
o | Variovorax sp. OAS795 | ABID97_RS01380 | | LysR substrate-binding domain-containing protein | insig. | 51 | 98 |
o | Paraburkholderia sabiae LMG 24235 | QEN71_RS31295 | | LysR substrate-binding domain-containing protein | insig. | 47 | 97 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS31320 | | LysR substrate-binding domain-containing protein | insig. | 45 | 98 |
o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF270 | | Transcriptional regulator, LysR family | insig. | 47 | 97 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS05215 | | LysR family transcriptional regulator | strong | 36 | 94 |
| Variovorax sp. SCN45 | GFF2367 | | Transcriptional regulator, LysR family | cofit | 35 | 97 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS31025 | | LysR family transcriptional regulator | insig. | 35 | 94 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS26660 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| Dyella japonica UNC79MFTsu3.2 | ABZR86_RS04085 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS26875 | | LysR family transcriptional regulator | insig. | 34 | 93 |
| Variovorax sp. SCN45 | GFF5271 | | Transcriptional regulator, LysR family | insig. | 34 | 91 |
| Paraburkholderia graminis OAS925 | ABIE53_000319 | | DNA-binding transcriptional LysR family regulator | sig. | 33 | 98 |
| Acidovorax sp. GW101-3H11 | Ac3H11_613 | | Galactose-binding protein regulator | strong | 36 | 94 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02334 | | DNA-binding transcriptional regulator, LysR family | insig. | 32 | 99 |
| Azospirillum brasilense Sp245 | AZOBR_RS31235 | | transcriptional regulator | insig. | 35 | 91 |
| Azospirillum sp. SherDot2 | MPMX19_06223 | | HTH-type transcriptional regulator GbpR | insig. | 33 | 95 |
| Burkholderia phytofirmans PsJN | BPHYT_RS28500 | | LysR family transcriptional regulator | no data | 35 | 92 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02950 | | DNA-binding transcriptional regulator, LysR family | insig. | 35 | 92 |
| Burkholderia phytofirmans PsJN | BPHYT_RS19705 | | LysR family transcriptional regulator | strong | 32 | 94 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS33955 | | LysR family transcriptional regulator | insig. | 35 | 93 |
| Variovorax sp. SCN45 | GFF5191 | | Galactose-binding protein regulator | insig. | 34 | 93 |
| Variovorax sp. OAS795 | ABID97_RS06825 | | LysR family transcriptional regulator | insig. | 33 | 93 |
| Ralstonia sp. UNC404CL21Col | ABZR87_RS01515 | | LysR family transcriptional regulator | insig. | 33 | 95 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3077.1 | | Galactose-binding protein regulator | insig. | 32 | 98 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_26165 | | LysR family transcriptional regulator | insig. | 34 | 92 |
| Rhizobium sp. OAE497 | ABIE40_RS13945 | | LysR family transcriptional regulator | sig. | 31 | 93 |
| Variovorax sp. SCN45 | GFF750 | | Transcriptional regulator LigR, LysR family | insig. | 32 | 93 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1106 | | Chromosome initiation inhibitor | insig. | 33 | 92 |
| Ralstonia solanacearum PSI07 | RPSI07_RS06330 | | LysR family transcriptional regulator | insig. | 32 | 93 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4201 | | Transcriptional regulator, LysR family | insig. | 30 | 93 |
| Burkholderia phytofirmans PsJN | BPHYT_RS33450 | | LysR family transcriptional regulator | insig. | 34 | 93 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_3928 | | Chromosome initiation inhibitor | sig. | 32 | 92 |
| Pseudomonas putida KT2440 | PP_2516 | | HTH-type transcriptional regulator GalR | insig. | 31 | 93 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5691 | | Chromosome initiation inhibitor | no data | 31 | 92 |
| Agrobacterium fabrum C58 | Atu2350 | | transcriptional regulator, LysR family | sig. | 31 | 94 |
| Sinorhizobium meliloti 1021 | SM_b20580 | | LysR family transcriptional regulator | insig. | 35 | 87 |
o | Serratia liquefaciens MT49 | IAI46_05785 | | LysR family transcriptional regulator | insig. | 33 | 88 |
| Escherichia coli ECRC101 | OKFHMN_23585 | lysR | transcriptional regulator | insig. | 29 | 92 |
| Escherichia coli ECRC101 | MCAODC_14635 | lysR | transcriptional regulator | insig. | 29 | 92 |
| Escherichia coli ECRC102 | NIAGMN_21350 | lysR | transcriptional regulator | insig. | 29 | 92 |
| Escherichia coli ECRC98 | JDDGAC_27540 | lysR | transcriptional regulator | no data | 29 | 92 |
| Escherichia coli ECRC99 | KEDOAH_04600 | lysR | transcriptional regulator | no data | 29 | 92 |
| Paraburkholderia graminis OAS925 | ABIE53_004922 | | LysR family pca operon transcriptional activator | insig. | 33 | 95 |
| Burkholderia phytofirmans PsJN | BPHYT_RS32890 | | LysR family transcriptional regulator | no data | 31 | 90 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2615 | | LysR family transcriptional regulator YdcI | insig. | 30 | 92 |
| Burkholderia phytofirmans PsJN | BPHYT_RS07230 | | LysR family transcriptional regulator | insig. | 32 | 93 |
| Escherichia coli ECRC62 | BNILDI_14075 | lysR | transcriptional regulator | insig. | 29 | 92 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS19325 | | LysR family transcriptional regulator | strong | 30 | 92 |
| Rahnella sp. WP5 | EX31_RS10195 | | LysR family transcriptional regulator | insig. | 30 | 91 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS30525 | | LysR family transcriptional regulator | strong | 30 | 88 |
| Pseudomonas putida KT2440 | PP_2833 | | Transcriptional regulator, LysR family | insig. | 30 | 95 |
| Rhizobium sp. OAE497 | ABIE40_RS26220 | | LysR family transcriptional regulator | insig. | 29 | 97 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS14825 | | pca operon transcription factor PcaQ | insig. | 31 | 96 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS12630 | | LysR family transcriptional regulator | strong | 30 | 92 |
o | Klebsiella michiganensis M5al | BWI76_RS19595 | | hypothetical protein | insig. | 30 | 93 |
| Burkholderia phytofirmans PsJN | BPHYT_RS28230 | | LysR family transcriptional regulator | no data | 31 | 92 |
| Paraburkholderia graminis OAS925 | ABIE53_005694 | | DNA-binding transcriptional LysR family regulator | strong | 31 | 92 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01375 | | LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway | sig. | 30 | 94 |
| Rhizobium sp. OAE497 | ABIE40_RS19620 | | pca operon transcription factor PcaQ | strong | 31 | 87 |
| Enterobacter sp. TBS_079 | MPMX20_02212 | | HTH-type transcriptional regulator GbpR | strong | 29 | 92 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01226 | | transcriptional regulator, LysR family | no data | 31 | 92 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03866 | | transcriptional regulator, LysR family | cofit | 32 | 96 |
| Acidovorax sp. GW101-3H11 | Ac3H11_3526 | | Transcriptional regulator, LysR family | insig. | 29 | 92 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4253.1 | | Transcriptional regulator, LysR family | insig. | 31 | 95 |
| Burkholderia phytofirmans PsJN | BPHYT_RS33725 | | LysR family transcriptional regulator | no data | 30 | 95 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS05115 | | LysR family transcriptional regulator | insig. | 31 | 87 |
| Pseudomonas putida KT2440 | PP_2649 | | Transcriptional regulator, LysR family | insig. | 30 | 93 |
| Pseudomonas putida KT2440 | PP_2832 | | galactose-binding protein regulator | insig. | 31 | 88 |
| Castellaniella sp019104865 MT123 | ABCV34_RS03730 | | LysR substrate-binding domain-containing protein | insig. | 29 | 96 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS32130 | | LysR substrate-binding domain-containing protein | insig. | 30 | 93 |
| Paraburkholderia graminis OAS925 | ABIE53_004026 | | LysR family transcriptional regulator of gallate degradation | insig. | 30 | 92 |
| Agrobacterium fabrum C58 | Atu4543 | | LysR family transcriptional regulator | strong | 29 | 94 |
| Pantoea sp. MT58 | IAI47_09590 | | LysR family transcriptional regulator | sig. | 31 | 92 |
| Klebsiella michiganensis M5al | BWI76_RS14195 | | LysR family transcriptional regulator | insig. | 30 | 88 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3376 | | Transcriptional regulator, LysR family | insig. | 28 | 88 |
| Variovorax sp. OAS795 | ABID97_RS24375 | | LysR substrate-binding domain-containing protein | strong | 30 | 96 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3798 | | Putative transcriptional regulator | insig. | 30 | 90 |
| Klebsiella michiganensis M5al | BWI76_RS13280 | | LysR family transcriptional regulator | strong | 28 | 92 |
| Variovorax sp. OAS795 | ABID97_RS09990 | | LysR family transcriptional regulator | insig. | 31 | 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1529 | | Putative transcriptional regulator | insig. | 31 | 86 |
| Enterobacter asburiae PDN3 | EX28DRAFT_1254 | | Transcriptional regulator | cofit | 28 | 92 |
| Escherichia coli ECOR27 | NOLOHH_19335 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | no data | 28 | 92 |
| Escherichia coli ECRC101 | OKFHMN_01655 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | insig. | 28 | 92 |
| Escherichia coli ECRC101 | MCAODC_16280 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | insig. | 28 | 92 |
| Escherichia coli ECRC102 | NIAGMN_25790 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | insig. | 28 | 92 |
| Escherichia coli ECRC98 | JDDGAC_04145 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | no data | 28 | 92 |
| Escherichia coli ECRC99 | KEDOAH_26785 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | no data | 28 | 92 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS23035 | | sporulation protein | insig. | 32 | 82 |
| Escherichia coli ECRC62 | BNILDI_17790 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | insig. | 28 | 92 |
| Variovorax sp. SCN45 | GFF4669 | | Pca operon transcriptional activator PcaQ | no data | 31 | 94 |
| Escherichia coli BL21 | ECD_01379 | | putative DNA-binding transcriptional regulator | insig. | 28 | 92 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02293 | | HTH-type transcriptional regulator CatM | insig. | 28 | 92 |
| Escherichia coli BW25113 | b1422 | ydcI | putative transcriptional regulator LYSR-type (VIMSS) | strong | 28 | 92 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03221 | | DNA-binding transcriptional regulator, LysR family | insig. | 28 | 93 |
| Escherichia coli ECOR38 | HEPCGN_26160 | ydcI | Uncharacterized HTH-type transcriptional regulator YdcI | cofit | 27 | 92 |
| Sinorhizobium meliloti 1021 | SM_b20896 | | LysR family transcriptional regulator | strong | 30 | 92 |
| Escherichia fergusonii Becca | EFB2_02558 | | HTH-type transcriptional regulator CatM | insig. | 27 | 92 |
| Escherichia coli Nissle 1917 | ECOLIN_RS08220 | | LysR substrate-binding domain-containing protein | no data | 27 | 92 |
| Paraburkholderia graminis OAS925 | ABIE53_004070 | | DNA-binding transcriptional LysR family regulator | strong | 29 | 94 |