Conservation of cofitness between SMc00094 and SMc01275 in Sinorhizobium meliloti 1021

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc00094 betaine aldehyde dehydrogenase 1.0 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.60 19
Rhizobium sp. OAE497 0.91 ABIE40_RS04520 betaine-aldehyde dehydrogenase 0.81 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Agrobacterium fabrum C58 0.87 Atu0829 betaine aldehyde dehydrogenase 0.81 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Phaeobacter inhibens DSM 17395 0.68 PGA1_c21670 betaine aldehyde dehydrogenase BetB 0.41 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Alteromonas macleodii MIT1002 0.55 MIT1002_02908 Betaine aldehyde dehydrogenase 0.26 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS25160 NAD/NADP-dependent betaine aldehyde dehydrogenase 0.22 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Marinobacter adhaerens HP15 0.54 HP15_3626 betaine aldehyde dehydrogenase 0.24 HP15_2221 pseudouridine synthase, RluA family low > 73
Paraburkholderia graminis OAS925 0.54 ABIE53_006148 betaine-aldehyde dehydrogenase 0.22 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_02464 betaine aldehyde dehydrogenase 0.22 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS08175 betaine-aldehyde dehydrogenase 0.22 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Azospirillum sp. SherDot2 0.53 MPMX19_01458 NAD/NADP-dependent betaine aldehyde dehydrogenase 0.43 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Klebsiella michiganensis M5al 0.52 BWI76_RS07615 betaine-aldehyde dehydrogenase 0.25 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Pseudomonas fluorescens SBW25 0.51 PFLU_RS27990 betaine-aldehyde dehydrogenase 0.25 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS27990 betaine-aldehyde dehydrogenase 0.25 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas simiae WCS417 0.51 PS417_26340 betaine-aldehyde dehydrogenase 0.26 PS417_21480 23S rRNA pseudouridylate synthase low > 88
Dickeya dadantii 3937 0.51 DDA3937_RS13265 betaine-aldehyde dehydrogenase 0.21 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Serratia liquefaciens MT49 0.50 IAI46_07715 betaine-aldehyde dehydrogenase 0.22 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Rahnella sp. WP5 0.50 EX31_RS18820 betaine-aldehyde dehydrogenase 0.25 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Pseudomonas putida KT2440 0.50 PP_5063 betaine aldehyde dehydrogenase, NAD-dependent 0.26 PP_1906 ribosomal large subunit pseudouridine synthase C 0.26 35
Pseudomonas stutzeri RCH2 0.50 Psest_2634 glycine betaine aldehyde dehydrogenase 0.26 Psest_1680 pseudouridine synthase, RluA family — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS08390 betaine-aldehyde dehydrogenase 0.25 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli Nissle 1917 0.50 ECOLIN_RS02055 betaine-aldehyde dehydrogenase 0.25 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 55
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_1083 Betaine aldehyde dehydrogenase (EC 1.2.1.8) 0.25 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.26 47
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2387 betaine-aldehyde dehydrogenase 0.26 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_13795 betaine-aldehyde dehydrogenase 0.25 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Pantoea sp. MT58 0.50 IAI47_08650 betaine-aldehyde dehydrogenase 0.24 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Pseudomonas sp. RS175 0.50 PFR28_04167 NAD/NADP-dependent betaine aldehyde dehydrogenase 0.26 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Enterobacter sp. TBS_079 0.50 MPMX20_01229 NAD/NADP-dependent betaine aldehyde dehydrogenase 0.25 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_2417 Betaine aldehyde dehydrogenase (EC 1.2.1.8) 0.25 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_07805 betaine-aldehyde dehydrogenase 0.25 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_4679 Betaine aldehyde dehydrogenase (EC 1.2.1.8) 0.25 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.22 67
Acinetobacter radioresistens SK82 0.50 MPMX26_02369 NAD/NADP-dependent betaine aldehyde dehydrogenase 0.25 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C low > 36
Escherichia coli BW25113 0.50 b0312 betB betaine aldehyde dehydrogenase, NAD-dependent (NCBI) 0.25 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia coli BL21 0.49 ECD_00268 betaine aldehyde dehydrogenase, NAD-dependent 0.25 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_03363 NAD/NADP-dependent betaine aldehyde dehydrogenase 0.25 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli ECRC102 0.49 NIAGMN_07100 betB betaine-aldehyde dehydrogenase 0.25 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC98 0.49 JDDGAC_12695 betB betaine-aldehyde dehydrogenase 0.25 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli ECRC100 0.49 OKFHMN_09045 betB betaine-aldehyde dehydrogenase 0.25 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECRC99 0.49 KEDOAH_18920 betB betaine-aldehyde dehydrogenase 0.25 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC101 0.49 MCAODC_28270 betB betaine-aldehyde dehydrogenase 0.25 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECOR27 0.49 NOLOHH_01895 betB betaine-aldehyde dehydrogenase 0.25 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECOR38 0.49 HEPCGN_07605 betB betaine-aldehyde dehydrogenase 0.25 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia fergusonii Becca 0.49 EFB2_03723 NAD/NADP-dependent betaine aldehyde dehydrogenase 0.25 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli ECRC62 0.49 BNILDI_00020 betB betaine-aldehyde dehydrogenase 0.25 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_4733 betaine aldehyde dehydrogenase 0.26 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_4733 betaine aldehyde dehydrogenase 0.26 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.965.1 Betaine aldehyde dehydrogenase (EC 1.2.1.8) 0.24 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Castellaniella sp019104865 MT123 0.36 ABCV34_RS09305 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 0.24 ABCV34_RS08415 RluA family pseudouridine synthase low > 48
Magnetospirillum magneticum AMB-1 0.36 AMB_RS04115 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 0.41 AMB_RS15620 RluA family pseudouridine synthase low > 64
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1827 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) 0.24 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF3279 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) 0.25 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78

Not shown: 0 genomes with orthologs for SMc00094 only; 33 genomes with orthologs for SMc01275 only