| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS30950 | | cation transporter | 1.0 | RR42_RS14800 | | LysR family transcriptional regulator | 0.59 | 3 |
| Variovorax sp. SCN45 | 0.82 | GFF4046 | | Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA | 0.36 | GFF590 | | Transcriptional regulator, LysR family | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.80 | HSERO_RS22160 | | cation transporter | 0.49 | HSERO_RS17845 | | LysR family transcriptional regulator | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.77 | GFF1094 | | Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA | 0.40 | GFF5181 | | LysR-family transcriptional regulator | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.76 | Ac3H11_4581 | | Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA | 0.36 | Ac3H11_4160 | | LysR-family transcriptional regulator | low | > 79 |
| Ralstonia solanacearum GMI1000 | 0.75 | RS_RS19530 | | CusA/CzcA family heavy metal efflux RND transporter | 0.78 | RS_RS11085 | | LysR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.75 | RALBFv3_RS21240 | | CusA/CzcA family heavy metal efflux RND transporter | 0.77 | RALBFv3_RS03640 | | LysR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.75 | UW163_RS22385 | | CusA/CzcA family heavy metal efflux RND transporter | 0.77 | UW163_RS10030 | | LysR family transcriptional regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.74 | ABZR87_RS21705 | | CusA/CzcA family heavy metal efflux RND transporter | 0.76 | ABZR87_RS15530 | | LysR substrate-binding domain-containing protein | low | > 80 |
| Pseudomonas simiae WCS417 | 0.74 | PS417_03355 | | cation transporter | 0.29 | PS417_08030 | | transcriptional regulator | 0.17 | 25 |
| Ralstonia solanacearum PSI07 | 0.74 | RPSI07_RS01895 | | CusA/CzcA family heavy metal efflux RND transporter | 0.77 | RPSI07_RS13590 | | LysR family transcriptional regulator | low | > 81 |
| Pseudomonas fluorescens SBW25 | 0.73 | PFLU_RS03470 | | CusA/CzcA family heavy metal efflux RND transporter | 0.29 | PFLU_RS08000 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.73 | PFLU_RS03470 | | CusA/CzcA family heavy metal efflux RND transporter | 0.29 | PFLU_RS08000 | | LysR family transcriptional regulator | low | > 109 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_4154 | | CzcA family heavy metal efflux protein (RefSeq) | 0.34 | Shewana3_1223 | | LysR family transcriptional regulator (RefSeq) | low | > 73 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.61 | Xcc-8004.5129.1 | | Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA | 0.40 | Xcc-8004.3097.1 | | Transcriptional regulator | low | > 74 |
| Dechlorosoma suillum PS | 0.61 | Dsui_1130 | | heavy metal efflux pump, cobalt-zinc-cadmium | 0.45 | Dsui_1258 | | transcriptional regulator | low | > 51 |
| Marinobacter adhaerens HP15 | 0.38 | HP15_110 | | heavy metal efflux pump, CzcA family | 0.39 | HP15_502 | | transcriptional regulator, LysR family protein | low | > 73 |
| Shewanella amazonensis SB2B | 0.35 | Sama_3188 | | CzcA family heavy metal efflux protein (RefSeq) | 0.34 | Sama_1388 | | LysR family transcriptional regulator (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.35 | SO0520 | | heavy metal efflux pump, CzcA family (NCBI ptt file) | 0.34 | SO3318 | | transcriptional regulator, LysR family (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.34 | Shew_3356 | | CzcA family heavy metal efflux protein (RefSeq) | 0.31 | Shew_2013 | | putative DNA-binding transcriptional regulator (RefSeq) | low | > 60 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS15140 | | CusA/CzcA family heavy metal efflux RND transporter | 0.37 | BWI76_RS06255 | | LysR family transcriptional regulator | low | > 92 |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_000169 | | Cu(I)/Ag(I) efflux system membrane protein CusA/SilA | 0.45 | ABIE53_002240 | | DNA-binding transcriptional LysR family regulator | low | > 113 |
| Escherichia coli ECRC99 | 0.32 | KEDOAH_20285 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | KEDOAH_03615 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | — | — |
| Escherichia coli ECRC100 | 0.32 | OKFHMN_07685 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | OKFHMN_24535 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | low | > 80 |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_05740 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | NIAGMN_22480 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | — | — |
| Escherichia coli ECRC101 | 0.32 | MCAODC_26900 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | MCAODC_20405 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.32 | OHPLBJKB_03134 | | Cation efflux system protein CusA | 0.39 | OHPLBJKB_01685 | | HTH-type transcriptional regulator YhaJ | low | > 73 |
| Escherichia coli BW25113 | 0.32 | b0575 | cusA | copper/silver efflux system, membrane component (NCBI) | 0.39 | b2015 | yeeY | putative transcriptional regulator LYSR-type (VIMSS) | low | > 76 |
| Escherichia coli BL21 | 0.32 | ECD_00536 | | copper/silver efflux system, membrane component | 0.39 | ECD_01918 | | LysR family putative transcriptional regulator | low | > 61 |
| Escherichia coli ECOR27 | 0.31 | NOLOHH_24065 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | NOLOHH_15860 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | low | > 75 |
| Escherichia coli ECOR38 | 0.31 | HEPCGN_00605 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | HEPCGN_03240 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | low | > 87 |
| Escherichia coli ECRC62 | 0.31 | BNILDI_22075 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | BNILDI_14760 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | low | > 75 |
| Escherichia fergusonii Becca | 0.31 | EFB2_03519 | | Cation efflux system protein CusA | 0.39 | EFB2_01841 | | HTH-type transcriptional regulator YhaJ | low | > 86 |
| Escherichia coli Nissle 1917 | 0.31 | ECOLIN_RS03145 | | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | ECOLIN_RS11920 | | LysR substrate-binding domain-containing protein | — | — |
| Rahnella sp. WP5 | 0.31 | EX31_RS10845 | | efflux RND transporter permease subunit | 0.39 | EX31_RS05190 | | LysR family transcriptional regulator | low | > 89 |
| Dickeya dadantii 3937 | 0.31 | DDA3937_RS06575 | | efflux RND transporter permease subunit | 0.33 | DDA3937_RS02775 | | LysR family transcriptional regulator | low | > 74 |
| Dickeya dianthicola ME23 | 0.31 | DZA65_RS03615 | | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | 0.33 | DZA65_RS02905 | | LysR family transcriptional regulator | low | > 75 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_1169 | | heavy metal efflux pump, CzcA family | 0.39 | EX28DRAFT_0543 | | Transcriptional regulator | low | > 76 |
| Dickeya dianthicola 67-19 | 0.30 | HGI48_RS03505 | | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | 0.33 | HGI48_RS02750 | | LysR family transcriptional regulator | low | > 71 |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_02315 | | Cation efflux system protein CusA | 0.38 | MPMX20_02999 | | HTH-type transcriptional regulator YhaJ | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS14795 | | efflux RND transporter permease subunit | 0.33 | HER17_RS18770 | | LysR family transcriptional regulator | low | > 75 |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_11330 | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA | 0.39 | JDDGAC_28645 | yeeY | Uncharacterized HTH-type transcriptional regulator YeeY | low | > 86 |
| Serratia liquefaciens MT49 | 0.29 | IAI46_17965 | | efflux RND transporter permease subunit | 0.41 | IAI46_07350 | | LysR family transcriptional regulator | low | > 86 |
| Burkholderia phytofirmans PsJN | 0.17 | BPHYT_RS10875 | | transporter | 0.46 | BPHYT_RS30350 | | LysR family transcriptional regulator | low | > 109 |
Not shown: 15 genomes with orthologs for RR42_RS30950 only; 8 genomes with orthologs for RR42_RS14800 only