Conservation of cofitness between RR42_RS37475 and RR42_RS13190 in Cupriavidus basilensis FW507-4G11

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS37475 peptide chain release factor 3 1.0 RR42_RS13190 outer membrane metallopeptidase lipoprotein nlpD 0.38 20
Ralstonia solanacearum PSI07 0.87 RPSI07_RS07810 peptide chain release factor 3 0.59 RPSI07_RS18145 LysM peptidoglycan-binding domain-containing protein low > 81
Ralstonia solanacearum GMI1000 0.87 RS_RS25080 peptide chain release factor 3 0.57 RS_RS06040 LysM peptidoglycan-binding domain-containing protein low > 80
Ralstonia solanacearum IBSBF1503 0.87 RALBFv3_RS23345 peptide chain release factor 3 0.60 RALBFv3_RS15230 hypothetical protein low > 76
Ralstonia solanacearum UW163 0.87 UW163_RS16595 peptide chain release factor 3 0.60 UW163_RS12695 hypothetical protein — —
Ralstonia sp. UNC404CL21Col 0.87 ABZR87_RS23485 peptide chain release factor 3 0.56 ABZR87_RS10870 peptidoglycan DD-metalloendopeptidase family protein low > 80
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS14640 peptide chain release factor 3 0.38 HSERO_RS14835 peptidase M23 low > 78
Lysobacter sp. OAE881 0.66 ABIE51_RS16210 peptide chain release factor 3 0.27 ABIE51_RS06500 peptidoglycan DD-metalloendopeptidase family protein — —
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.1590.1 Peptide chain release factor 3 0.28 Xcc-8004.3127.1 Lipoprotein NlpD — —
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2239 peptide chain release factor 3 0.29 B158DRAFT_2299 Membrane proteins related to metalloendopeptidases low > 40
Shewanella loihica PV-4 0.64 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.31 Shew_1212 peptidase M23B (RefSeq) low > 60
Dechlorosoma suillum PS 0.63 Dsui_2418 peptide chain release factor 3 0.41 Dsui_1970 metalloendopeptidase-like membrane protein low > 51
Pseudomonas stutzeri RCH2 0.62 Psest_3351 peptide chain release factor 3 0.31 Psest_2807 Membrane proteins related to metalloendopeptidases — —
Pseudomonas sp. S08-1 0.62 OH686_08765 peptide chain release factor 3 0.31 OH686_18180 Murein hydrolase activator NlpD — —
Pseudomonas putida KT2440 0.62 PP_0872 Peptide chain release factor 3 0.33 PP_1622 metallopeptidase, M23B subfamily — —
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_05420 peptide chain release factor 3 0.33 AO353_16610 peptigoglycan-binding protein LysM — —
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_07285 peptide chain release factor 3 0.31 AO356_05890 peptigoglycan-binding protein LysM — —
Pseudomonas simiae WCS417 0.62 PS417_04030 peptide chain release factor 3 0.31 PS417_06360 peptigoglycan-binding protein LysM — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.32 Psyr_1373 Peptidoglycan-binding LysM:Peptidase M23B — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.32 Psyr_1373 Peptidoglycan-binding LysM:Peptidase M23B — —
Pseudomonas sp. RS175 0.62 PFR28_00118 Peptide chain release factor RF3 0.31 PFR28_00426 hypothetical protein — —
Pseudomonas fluorescens SBW25 0.62 PFLU_RS04070 peptide chain release factor 3 0.32 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS04070 peptide chain release factor 3 0.32 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_03470 peptide chain release factor 3 0.28 CSW01_02830 murein hydrolase activator NlpD low > 62
Alteromonas macleodii MIT1002 0.61 MIT1002_01192 Peptide chain release factor 3 0.33 MIT1002_00626 Murein hydrolase activator NlpD precursor low > 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.58 GFF768 Peptide chain release factor 3 0.44 GFF3881 Lipoprotein NlpD low > 90
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) 0.46 H281DRAFT_00843 lipoprotein NlpD low > 103
Paraburkholderia graminis OAS925 0.57 ABIE53_004717 peptide chain release factor 3 0.48 ABIE53_002056 lipoprotein NlpD low > 113
Castellaniella sp019104865 MT123 0.56 ABCV34_RS12505 peptide chain release factor 3 0.27 ABCV34_RS03040 peptidoglycan DD-metalloendopeptidase family protein — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS17200 peptide chain release factor 3 0.47 QEN71_RS22245 peptidoglycan DD-metalloendopeptidase family protein — —
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS34275 peptide chain release factor 3 0.47 BPHYT_RS09110 peptidase M23 — —
Variovorax sp. SCN45 0.54 GFF2045 Peptide chain release factor 3 0.42 GFF2843 Murein hydrolase activator NlpD 0.75 29
Acidovorax sp. GW101-3H11 0.53 Ac3H11_3041 Peptide chain release factor 3 0.42 Ac3H11_1786 Lipoprotein NlpD — —

Not shown: 62 genomes with orthologs for RR42_RS37475 only; 2 genomes with orthologs for RR42_RS13190 only