Conservation of cofitness between RR42_RS17350 and RR42_RS00910 in Cupriavidus basilensis FW507-4G11

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS17350 twitching motility protein PilT 1.0 RR42_RS00910 hypothetical protein 0.36 15
Ralstonia solanacearum PSI07 0.89 RPSI07_RS11730 type IV pili twitching motility protein PilT 0.60 RPSI07_RS22830 hypothetical protein low > 81
Ralstonia solanacearum GMI1000 0.88 RS_RS13430 type IV pili twitching motility protein PilT 0.55 RS_RS01325 hypothetical protein low > 80
Ralstonia solanacearum UW163 0.88 UW163_RS08055 type IV pili twitching motility protein PilT 0.56 UW163_RS03095 hypothetical protein — —
Ralstonia sp. UNC404CL21Col 0.88 ABZR87_RS01220 type IV pilus twitching motility protein PilT 0.59 ABZR87_RS06285 YchJ family protein low > 80
Ralstonia solanacearum IBSBF1503 0.88 RALBFv3_RS05570 type IV pili twitching motility protein PilT 0.56 RALBFv3_RS10485 hypothetical protein low > 76
Variovorax sp. OAS795 0.77 ABID97_RS00255 type IV pilus twitching motility protein PilT 0.38 ABID97_RS25230 YchJ family metal-binding protein low > 91
Acidovorax sp. GW101-3H11 0.77 Ac3H11_4473 Twitching motility protein PilT 0.39 Ac3H11_3004 UPF0225 protein YchJ low > 79
Dechlorosoma suillum PS 0.76 Dsui_0604 pilus retraction protein PilT 0.33 Dsui_2325 hypothetical protein low > 51
Variovorax sp. SCN45 0.76 GFF3743 Twitching motility protein PilT 0.35 GFF1999 GTG start codon — —
Rhodanobacter sp. FW510-T8 0.73 OKGIIK_11130 pilT twitching motility protein PilT 0.37 OKGIIK_12900 ychJ UPF0225 protein XHC_4340 low > 52
Rhodanobacter denitrificans MT42 0.72 LRK55_RS04025 type IV pilus twitching motility protein PilT 0.36 LRK55_RS10685 YchJ family metal-binding protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS04255 type IV pilus twitching motility protein PilT 0.36 LRK54_RS10980 hypothetical protein low > 59
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS10420 type IV pilus twitching motility protein PilT 0.33 ABZR86_RS16820 YchJ family metal-binding protein low > 74
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_0195 pilus retraction protein PilT 0.28 B158DRAFT_1196 Uncharacterized protein conserved in bacteria low > 40
Lysobacter sp. OAE881 0.70 ABIE51_RS16055 type IV pilus twitching motility protein PilT 0.38 ABIE51_RS00530 YchJ family protein low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF2721 Twitching motility protein PilT 0.41 GFF1717 UPF0225 protein YchJ low > 90
Shewanella oneidensis MR-1 0.69 SO3351 pilT twitching motility protein PilT (NCBI ptt file) 0.22 SO2497 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.69 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) 0.22 Shewana3_2159 SecC motif-containing protein (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_02460 type IV pili twitching motility protein PilT 0.23 CSW01_09275 hypothetical protein low > 62
Pseudomonas fluorescens SBW25 0.58 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.22 PFLU_RS06515 YchJ family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.22 PFLU_RS06515 YchJ family protein 0.14 75
Pseudomonas simiae WCS417 0.56 PS417_26720 twitching motility protein PilT 0.23 PS417_06485 hypothetical protein low > 88
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS19000 twitching motility protein PilT 0.46 HSERO_RS23450 hypothetical protein low > 78
Desulfovibrio vulgaris Hildenborough JW710 0.49 DVU1262 pilT-1 twitching motility protein PilT (TIGR) 0.26 DVU0242 SEC-C motif domain protein (TIGR) low > 55
Pectobacterium carotovorum WPP14 0.44 HER17_RS03815 type IV pilus twitching motility protein PilT 0.25 HER17_RS11060 YchJ family protein low > 75
Dickeya dadantii 3937 0.43 DDA3937_RS17295 type IV pilus twitching motility protein PilT 0.27 DDA3937_RS10330 YchJ family protein low > 74
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2988 pilus retraction protein PilT 0.31 EX28DRAFT_0859 Uncharacterized protein conserved in bacteria low > 76
Escherichia fergusonii Becca 0.42 EFB2_00952 putative protein YggR 0.31 EFB2_02693 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.42 ECOLIN_RS16410 type IV pilus twitching motility protein PilT 0.32 ECOLIN_RS07465 YchJ family protein — —
Dickeya dianthicola 67-19 0.42 HGI48_RS17340 type IV pilus twitching motility protein PilT 0.26 HGI48_RS10340 YchJ family protein low > 71
Dickeya dianthicola ME23 0.42 DZA65_RS18430 type IV pilus twitching motility protein PilT 0.26 DZA65_RS10815 YchJ family protein low > 75
Pantoea sp. MT58 0.41 IAI47_03600 type IV pilus twitching motility protein PilT 0.30 IAI47_09015 YchJ family protein low > 76
Rahnella sp. WP5 0.41 EX31_RS02680 type IV pilus twitching motility protein PilT 0.23 EX31_RS10110 YchJ family protein low > 89
Escherichia coli ECOR38 0.41 HEPCGN_18565 yggR Uncharacterized protein YggR 0.32 HEPCGN_25035 ychJ YchJ family protein low > 87
Escherichia coli BL21 0.41 ECD_02780 putative PilT family AAA+ ATPase 0.32 ECD_01209 UPF0225 family protein low > 61
Escherichia coli ECRC62 0.41 BNILDI_09710 yggR Uncharacterized protein YggR 0.32 BNILDI_18630 ychJ YchJ family protein low > 75
Escherichia coli ECOR27 0.41 NOLOHH_11130 yggR Uncharacterized protein YggR 0.32 NOLOHH_20475 ychJ YchJ family protein low > 75
Escherichia coli BW25113 0.41 b2950 yggR putative protein transport (VIMSS) 0.32 b1233 ychJ hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_00766 putative protein YggR 0.32 OHPLBJKB_02452 hypothetical protein low > 73
Serratia liquefaciens MT49 0.40 IAI46_21405 type IV pilus twitching motility protein PilT 0.30 IAI46_14260 YchJ family protein low > 86
Escherichia coli ECRC98 0.40 JDDGAC_22890 yggR Uncharacterized protein YggR 0.32 JDDGAC_06000 ychJ YchJ family protein low > 86
Escherichia coli ECRC102 0.40 NIAGMN_17025 yggR Uncharacterized protein YggR 0.32 NIAGMN_27660 ychJ YchJ family protein — —
Escherichia coli ECRC100 0.40 OKFHMN_19260 yggR Uncharacterized protein YggR 0.32 OKFHMN_28575 ychJ YchJ family protein low > 80
Escherichia coli ECRC99 0.40 KEDOAH_08880 yggR Uncharacterized protein YggR 0.32 KEDOAH_25570 ychJ YchJ family protein — —
Escherichia coli ECRC101 0.40 MCAODC_09780 yggR Uncharacterized protein YggR 0.32 MCAODC_21685 ychJ YchJ family protein low > 87
Klebsiella michiganensis M5al 0.39 BWI76_RS24095 twitching motility protein PilT 0.31 BWI76_RS17285 hypothetical protein low > 92

Not shown: 23 genomes with orthologs for RR42_RS17350 only; 8 genomes with orthologs for RR42_RS00910 only