Conservation of cofitness between Psyr_1567 and Psyr_1760 in Pseudomonas syringae pv. syringae B728a

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1567 Uncharacterized conserved protein UCP006173 1.0 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N 0.36 19
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1567 Uncharacterized conserved protein UCP006173 1.00 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N low > 86
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_17875 hypothetical protein 0.64 AO353_23485 lytic transglycosylase low > 101
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_04400 hypothetical protein 0.65 AO356_24475 lytic transglycosylase low > 104
Pseudomonas sp. RS175 0.92 PFR28_00716 hypothetical protein 0.65 PFR28_01551 Membrane-bound lytic murein transglycosylase D 0.35 7
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3349 YcgN (Fragment) 0.64 Pf1N1B4_4595 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_4492 YcgN (Fragment) 0.63 PfGW456L13_3341 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 87
Pseudomonas orientalis W4I3 0.91 QF045_RS10050 YcgN family cysteine cluster protein 0.62 QF045_RS14750 transglycosylase SLT domain-containing protein low > 93
Pseudomonas lactucae CFBP13502 0.91 GEMAOFIL_01613 hypothetical protein 0.63 GEMAOFIL_02688 Membrane-bound lytic murein transglycosylase D low > 96
Pseudomonas simiae WCS417 0.91 PS417_07400 hypothetical protein 0.63 PS417_12215 lytic transglycosylase low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_2723 YcgN (Fragment) 0.63 Pf6N2E2_586 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 103
Pseudomonas fluorescens SBW25 0.91 PFLU_RS07485 YcgN family cysteine cluster protein 0.63 PFLU_RS12905 transglycosylase SLT domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS07485 YcgN family cysteine cluster protein 0.63 PFLU_RS12905 transglycosylase SLT domain-containing protein low > 109
Pseudomonas sp. DMC3 0.89 GFF2314 hypothetical protein 0.65 GFF1021 Membrane-bound lytic murein transglycosylase D low > 89
Pseudomonas sp. S08-1 0.87 OH686_05300 UPF0260 protein YcgN 0.55 OH686_03585 Membrane-bound lytic murein transglycosylase D low > 80
Pseudomonas segetis P6 0.86 MPMX49_01841 hypothetical protein 0.57 MPMX49_02811 Membrane-bound lytic murein transglycosylase D low > 75
Pseudomonas aeruginosa PA14 0.84 IKLFDK_06165 YcgN family cysteine cluster protein 0.59 IKLFDK_08810 lytic transglycosylase low > 98
Pseudomonas aeruginosa MRSN321 0.84 DY961_RS18830 YcgN family cysteine cluster protein 0.59 DY961_RS20790 lytic transglycosylase domain-containing protein low > 100
Pseudomonas aeruginosa PUPa3 0.84 DQ20_RS52970 YcgN family cysteine cluster protein 0.59 DQ20_RS54870 lytic transglycosylase domain-containing protein low > 101
Pseudomonas sp. SVBP6 0.84 COO64_RS22310 YcgN family cysteine cluster protein 0.61 COO64_RS19245 transglycosylase SLT domain-containing protein low > 93
Pseudomonas stutzeri RCH2 0.84 Psest_2992 Uncharacterized conserved protein 0.53 Psest_2070 FOG: LysM repeat low > 67
Pseudomonas putida KT2440 0.83 PP_4587 conserved protein of unknown function 0.53 PP_4145 Membrane-bound lytic murein transglycosylase D low > 96
Pseudomonas sp. BP01 0.80 JOY50_RS01535 YcgN family cysteine cluster protein 0.59 JOY50_RS07095 lytic transglycosylase domain-containing protein low > 84
Enterobacter sp. TBS_079 0.51 MPMX20_02704 hypothetical protein 0.27 MPMX20_00896 Membrane-bound lytic murein transglycosylase D low > 85
Klebsiella michiganensis M5al 0.50 BWI76_RS17765 hypothetical protein 0.27 BWI76_RS05435 murein transglycosylase D low > 92
Escherichia coli BW25113 0.50 b1181 ycgN conserved protein (RefSeq) 0.28 b0211 mltD predicted membrane-bound lytic murein transglycosylase D (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.50 HER17_RS11240 YcgN family cysteine cluster protein 0.25 HER17_RS05450 murein transglycosylase D low > 75
Enterobacter asburiae PDN3 0.50 EX28DRAFT_0761 Uncharacterized conserved protein 0.27 EX28DRAFT_2683 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 76
Escherichia coli BL21 0.50 ECD_01156 UPF0153 family cysteine cluster protein 0.28 ECD_00204 putative membrane-bound lytic murein transglycosylase D — —
Escherichia coli Nissle 1917 0.50 ECOLIN_RS07145 YcgN family cysteine cluster protein 0.28 ECOLIN_RS01155 murein transglycosylase D — —
Erwinia amylovora T8 0.49 OLJFJH_13140 YcgN family cysteine cluster protein 0.26 OLJFJH_18645 murein transglycosylase D low > 58
Erwinia tracheiphila HP pepo 2.2 0.49 IJEDHG_22495 ycgN YcgN family cysteine cluster protein 0.25 IJEDHG_15375 mltD murein transglycosylase D low > 61
Pantoea agglomerans CFBP13505 P0401 0.49 PagCFBP13505_RS02705 YcgN family cysteine cluster protein 0.27 PagCFBP13505_RS09810 murein transglycosylase D low > 74
Pantoea sp. MT58 0.49 IAI47_08870 YcgN family cysteine cluster protein 0.26 IAI47_15345 murein transglycosylase D low > 76
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_05385 YcgN family cysteine cluster protein 0.30 CSW01_11400 lytic transglycosylase low > 62
Serratia liquefaciens MT49 0.48 IAI46_14490 YcgN family cysteine cluster protein 0.26 IAI46_04130 murein transglycosylase D low > 87
Marinobacter adhaerens HP15 0.48 HP15_1880 uncharacterized conserved protein UCP006173 0.34 HP15_1806 membrane-bound lytic murein transglycosylase D precursor low > 73
Kangiella aquimarina DSM 16071 0.47 B158DRAFT_1576 Uncharacterized conserved protein 0.30 B158DRAFT_1060 FOG: LysM repeat low > 40
Shewanella loihica PV-4 0.45 Shew_2181 hypothetical protein (RefSeq) 0.32 Shew_2115 lytic transglycosylase, catalytic (RefSeq) low > 60
Shewanella sp. ANA-3 0.44 Shewana3_2379 hypothetical protein (RefSeq) 0.31 Shewana3_2370 MltD domain-containing protein (RefSeq) — —
Shewanella amazonensis SB2B 0.42 Sama_1927 hypothetical protein (RefSeq) 0.28 Sama_1885 Slt family transglycosylase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.42 SO2573 conserved hypothetical protein (NCBI ptt file) 0.31 SO2564 transglycosylase, Slt family (NCBI ptt file) 0.29 14
Alteromonas macleodii MIT1002 0.37 MIT1002_02583 hypothetical protein 0.31 MIT1002_02495 Membrane-bound lytic murein transglycosylase D precursor low > 70

Not shown: 32 genomes with orthologs for Psyr_1567 only; 12 genomes with orthologs for Psyr_1760 only