Conservation of cofitness between Pf1N1B4_1186 and Pf1N1B4_1187 in Pseudomonas fluorescens FW300-N1B4

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_1186 L-lactate permease 1.0 Pf1N1B4_1187 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE 0.80 2
Pseudomonas sp. RS175 0.94 PFR28_00063 Glycolate permease GlcA 0.93 PFR28_00062 Lactate utilization protein A 0.93 3
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_3380 L-lactate permease 0.95 Pf6N2E2_3381 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE 0.96 1
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_07550 L-lactate and D-lactate permease (lctP family) (from data) 0.95 AO356_07555 oxidoreductase 0.94 2
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_5114 L-lactate permease 0.97 PfGW456L13_5115 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE 0.96 2
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_05700 L-lactate permease 0.96 AO353_05705 oxidoreductase 0.92 3
Escherichia coli ECOR38 0.75 HEPCGN_18025 glcA glycolate permease GlcA 0.26 HEPCGN_07630 ykgE Uncharacterized protein YkgE low > 87
Escherichia coli Nissle 1917 0.75 ECOLIN_RS17115 glycolate permease GlcA 0.26 ECOLIN_RS02000 (Fe-S)-binding protein low > 55
Escherichia fergusonii Becca 0.75 EFB2_00840 Glycolate permease GlcA 0.26 EFB2_03734 Lactate utilization protein A 0.52 3
Escherichia coli ECOR27 0.75 NOLOHH_10950 glcA glycolate permease GlcA 0.26 NOLOHH_01920 ykgE Uncharacterized protein YkgE low > 75
Escherichia coli BW25113 0.75 b2975 yghK glycolate transporter (NCBI) 0.26 b0306 ykgE predicted oxidoreductase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00732 Glycolate permease GlcA 0.26 OHPLBJKB_03376 Lactate utilization protein A low > 73
Escherichia coli BL21 0.75 ECD_02843 glycolate transporter 0.26 ECD_00262 cysteine-rich LutA family protein; putative electron transport chain YkgEFG component low > 61
Escherichia coli ECRC62 0.75 BNILDI_00565 glcA glycolate permease GlcA 0.26 BNILDI_00045 ykgE Uncharacterized protein YkgE low > 75
Azospirillum brasilense Sp245 0.69 AZOBR_RS25125 L-lactate permease 0.52 AZOBR_RS25115 Fe-S oxidoreductase low > 97
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS21280 L-lactate permease 0.52 RR42_RS21295 L-lactate dehydrogenase, LutA subunit (from data) 0.76 4
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS10155 lactate permease LctP family transporter 0.53 QEN71_RS10140 (Fe-S)-binding protein low > 153
Shewanella oneidensis MR-1 0.68 SO0827 lldP propionate/L-lactate/D-lactate transporter (from data) 0.21 SO1520 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.63 MCAODC_06290 lldP L-lactate permease 0.26 MCAODC_28330 ykgE Uncharacterized protein YkgE low > 87
Escherichia coli ECRC99 0.63 KEDOAH_12370 lldP L-lactate permease 0.26 KEDOAH_18860 ykgE Uncharacterized protein YkgE — —
Escherichia coli ECRC100 0.63 OKFHMN_15780 lldP L-lactate permease 0.26 OKFHMN_09105 ykgE Uncharacterized protein YkgE low > 80
Escherichia coli ECRC98 0.63 JDDGAC_19405 lldP L-lactate permease 0.26 JDDGAC_12755 ykgE Uncharacterized protein YkgE low > 86
Escherichia coli ECRC102 0.63 NIAGMN_13540 lldP L-lactate permease 0.26 NIAGMN_07170 ykgE Uncharacterized protein YkgE — —
Rhodospirillum rubrum S1H 0.62 Rru_A1409 L-lactate permease (NCBI) 0.47 Rru_A1413 Protein of unknown function DUF224, cysteine-rich region (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.61 AMB_RS20875 L-lactate permease 0.47 AMB_RS20885 (Fe-S)-binding protein low > 64
Desulfovibrio vulgaris Miyazaki F 0.48 DvMF_2129 L-lactate transport (RefSeq) 0.48 DvMF_0397 protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU3284 b2975 L-lactate permease (TIGR) 0.49 DVU1783 cysteine-rich domain protein (TIGR) low > 55
Paraburkholderia graminis OAS925 0.31 ABIE53_002860 lactate permease 0.34 ABIE53_002787 L-lactate dehydrogenase complex protein LldE low > 113
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_00392 lactate permease 0.33 H281DRAFT_00472 L-lactate dehydrogenase complex protein LldE low > 103
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS13235 lactate permease 0.33 BPHYT_RS12810 Fe-S oxidoreductase low > 109
Dickeya dianthicola ME23 0.23 DZA65_RS12780 L-lactate permease 0.27 DZA65_RS08665 (Fe-S)-binding protein low > 75
Dickeya dianthicola 67-19 0.23 HGI48_RS12340 L-lactate permease 0.27 HGI48_RS08070 (Fe-S)-binding protein low > 71
Dickeya dadantii 3937 0.23 DDA3937_RS12250 L-lactate permease 0.27 DDA3937_RS07205 (Fe-S)-binding protein low > 74
Bacteroides thetaiotaomicron VPI-5482 0.21 BT1453 L-lactate permease (NCBI ptt file) 0.23 BT4455 oxidoreductase, putative glycolate oxidase (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS17640 L-lactate permease 0.22 HMPREF1058_RS18100 (Fe-S)-binding protein low > 67
Bacteroides ovatus ATCC 8483 0.21 BACOVA_04138 transporter, lactate permease (LctP) family 0.23 BACOVA_05262 cysteine-rich domain protein low > 94
Shewanella amazonensis SB2B 0.15 Sama_2439 L-lactate permease, putative (RefSeq) 0.23 Sama_2441 hypothetical protein (RefSeq) low > 62
Pseudomonas stutzeri RCH2 0.15 Psest_0955 D,L-lactate:H+ symporter (from data) 0.85 Psest_0954 Fe-S oxidoreductase 0.83 1
Shewanella loihica PV-4 0.14 Shew_3135 L-lactate permease (RefSeq) 0.22 Shew_3004 hypothetical protein (RefSeq) 0.60 8
Shewanella sp. ANA-3 0.14 Shewana3_2904 propionate/L-lactate/D-lactate transporter (from data) 0.22 Shewana3_2906 hypothetical protein (RefSeq) 0.52 25
Phocaeicola dorei CL03T12C01 0.10 ABI39_RS13830 L-lactate permease 0.21 ABI39_RS14425 (Fe-S)-binding protein low > 72

Not shown: 15 genomes with orthologs for Pf1N1B4_1186 only; 13 genomes with orthologs for Pf1N1B4_1187 only