Conservation of cofitness between PP_4964 and PP_5309 in Pseudomonas putida KT2440

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4964 D-erythrose 4-phosphate dehydrogenase 1.0 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.38 14
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase 0.89 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase 0.90 AO356_12385 LysR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4656 D-erythrose-4-phosphate dehydrogenase 0.93 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase 0.88 AO353_09315 LysR family transcriptional regulator — —
Pseudomonas sp. RS175 0.89 PFR28_04187 D-erythrose-4-phosphate dehydrogenase 0.90 PFR28_04434 Hydrogen peroxide-inducible genes activator — —
Pseudomonas simiae WCS417 0.88 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase 0.89 PS417_27865 LysR family transcriptional regulator — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase 0.88 PfGW456L13_773 Hydrogen peroxide-inducible genes activator — —
Pseudomonas sp. S08-1 0.87 OH686_10765 erythrose-4-phosphate dehydrogenase 0.85 OH686_13510 Hydrogen peroxide-inducible genes activator — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.92 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.92 Psyr_0202 transcriptional regulator, LysR family — —
Pseudomonas stutzeri RCH2 0.83 Psest_0329 erythrose-4-phosphate dehydrogenase 0.87 Psest_4191 Transcriptional regulator — —
Dechlorosoma suillum PS 0.59 Dsui_1558 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 0.55 Dsui_0823 transcriptional regulator — —
Marinobacter adhaerens HP15 0.56 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I 0.64 HP15_308 oxidative stress regulatory protein OxyR — —
Castellaniella sp019104865 MT123 0.54 ABCV34_RS03650 glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein 0.52 ABCV34_RS03575 LysR substrate-binding domain-containing protein low > 48
Pantoea sp. MT58 0.51 IAI47_03685 erythrose-4-phosphate dehydrogenase 0.34 IAI47_00930 DNA-binding transcriptional regulator OxyR low > 76
Pectobacterium carotovorum WPP14 0.51 HER17_RS02685 erythrose-4-phosphate dehydrogenase 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Rahnella sp. WP5 0.51 EX31_RS21405 erythrose-4-phosphate dehydrogenase 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Escherichia coli ECRC98 0.51 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase 0.36 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC102 0.51 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase 0.36 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECOR27 0.51 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase 0.36 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR low > 57
Escherichia coli ECRC101 0.51 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase 0.36 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase 0.36 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR low > 52
Escherichia coli ECOR38 0.51 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase 0.36 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR 0.86 38
Escherichia coli ECRC101 0.51 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase 0.36 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC62 0.51 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase 0.36 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase 0.36 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator low > 73
Escherichia coli BL21 0.51 ECD_02758 D-erythrose 4-phosphate dehydrogenase 0.36 ECD_03846 oxidative and nitrosative stress transcriptional regulator low > 60
Escherichia coli ECRC99 0.51 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase 0.36 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Enterobacter sp. TBS_079 0.51 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator low > 85
Escherichia coli BW25113 0.51 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) 0.36 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) low > 76
Dickeya dianthicola 67-19 0.50 HGI48_RS18445 erythrose-4-phosphate dehydrogenase 0.36 HGI48_RS20405 DNA-binding transcriptional regulator OxyR low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS19580 erythrose-4-phosphate dehydrogenase 0.36 DZA65_RS21450 DNA-binding transcriptional regulator OxyR 0.35 21
Escherichia fergusonii Becca 0.50 EFB2_00979 D-erythrose-4-phosphate dehydrogenase 0.36 EFB2_04651 Hydrogen peroxide-inducible genes activator low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) 0.35 GFF2347 Hydrogen peroxide-inducible genes activator low > 78
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase 0.36 EX28DRAFT_4424 Transcriptional regulator — —
Dickeya dadantii 3937 0.50 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase 0.36 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR low > 74
Serratia liquefaciens MT49 0.50 IAI46_21015 erythrose-4-phosphate dehydrogenase 0.34 IAI46_24475 DNA-binding transcriptional regulator OxyR low > 86
Shewanella amazonensis SB2B 0.50 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) 0.23 Sama_0860 LysR family transcriptional regulator (RefSeq) low > 62
Klebsiella michiganensis M5al 0.49 BWI76_RS23985 erythrose-4-phosphate dehydrogenase 0.35 BWI76_RS00865 DNA-binding transcriptional regulator OxyR low > 92
Alteromonas macleodii MIT1002 0.49 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase 0.25 MIT1002_01120 Morphology and auto-aggregation control protein — —
Erwinia tracheiphila SCR3 0.49 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase 0.34 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR low > 74
Shewanella loihica PV-4 0.49 Shew_0753 erythrose 4-phosphate dehydrogenase (RefSeq) 0.22 Shew_1035 LysR family transcriptional regulator (RefSeq) — —
Shewanella sp. ANA-3 0.49 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_02530 D-erythrose-4-phosphate dehydrogenase 0.32 CSW01_13340 DNA-binding transcriptional regulator OxyR low > 62
Acinetobacter radioresistens SK82 0.38 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase 0.27 MPMX26_02334 Hydrogen peroxide-inducible genes activator low > 36

Not shown: 0 genomes with orthologs for PP_4964 only; 46 genomes with orthologs for PP_5309 only