Conservation of cofitness between PP_0364 and PP_5303 in Pseudomonas putida KT2440

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0364 pimeloyl-[acp] methyl ester esterase 1.0 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.52 10
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_07515 transporter 0.97 AO353_09285 reactive intermediate/imine deaminase 0.46 59
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2489 Biotin synthesis protein BioH 0.98 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.54 14
Pseudomonas simiae WCS417 0.60 PS417_25995 transporter 0.97 PS417_27835 endoribonuclease — —
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_1149 Biotin synthesis protein BioH 0.97 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS27640 alpha/beta fold hydrolase 0.97 PFLU_RS29515 RidA family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS27640 alpha/beta fold hydrolase 0.97 PFLU_RS29515 RidA family protein 0.33 12
Pseudomonas sp. RS175 0.59 PFR28_04101 Pimeloyl-[acyl-carrier protein] methyl ester esterase 0.98 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_14145 transporter 0.97 AO356_12475 reactive intermediate/imine deaminase low > 104
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_4762 Biotin synthesis protein BioH 0.97 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup low > 103
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_4685 bioH protein 0.89 Psyr_0208 endoribonuclease L-PSP — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_4685 bioH protein 0.89 Psyr_0208 endoribonuclease L-PSP — —
Pseudomonas sp. S08-1 0.54 OH686_10345 Pimeloyl-[acyl-carrier protein] methyl ester esterase BioH 0.93 OH686_13545 RidA/YER057c/UK114 superfamily protein low > 80
Pseudomonas stutzeri RCH2 0.46 Psest_0413 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 0.90 Psest_3818 endoribonuclease L-PSP, putative 0.51 13
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_13715 pimeloyl-[acyl-carrier protein] methyl ester esterase 0.43 CSW01_12735 RidA family protein low > 62
Acinetobacter radioresistens SK82 0.23 MPMX26_02455 Pimeloyl-[acyl-carrier protein] methyl ester esterase 0.71 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase low > 36
Enterobacter asburiae PDN3 0.22 EX28DRAFT_4130 pimelyl-[acyl-carrier protein] methyl ester esterase 0.39 EX28DRAFT_3444 reactive intermediate/imine deaminase low > 76
Enterobacter sp. TBS_079 0.21 MPMX20_04299 Pimeloyl-[acyl-carrier protein] methyl ester esterase 0.40 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase low > 85
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_0866 putative pimeloyl-BioC--CoA transferase BioH 0.77 B158DRAFT_0573 endoribonuclease L-PSP, putative — —
Alteromonas macleodii MIT1002 0.21 MIT1002_04016 Pimelyl-[acyl-carrier protein] methyl ester esterase 0.71 MIT1002_00109 Putative reactive intermediate deaminase TdcF low > 70
Shewanella loihica PV-4 0.20 Shew_3630 bioH protein (RefSeq) 0.73 Shew_3500 putative endoribonuclease L-PSP (RefSeq) low > 60
Rahnella sp. WP5 0.20 EX31_RS04915 pimeloyl-ACP methyl ester esterase BioH 0.43 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase low > 89
Pantoea sp. MT58 0.20 IAI47_01790 pimeloyl-ACP methyl ester esterase BioH 0.41 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase low > 76
Shewanella sp. ANA-3 0.20 Shewana3_4010 bioH protein (RefSeq) 0.73 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) — —
Shewanella amazonensis SB2B 0.20 Sama_3505 bioH protein (RefSeq) 0.79 Sama_0263 YjgF-like protein (RefSeq) — —
Escherichia coli Nissle 1917 0.20 ECOLIN_RS19490 pimeloyl-ACP methyl ester esterase BioH 0.42 ECOLIN_RS17920 enamine/imine deaminase low > 52
Escherichia fergusonii Becca 0.20 EFB2_00416 Pimeloyl-[acyl-carrier protein] methyl ester esterase 0.42 EFB2_00701 Putative reactive intermediate deaminase TdcF low > 86
Escherichia coli ECOR38 0.19 HEPCGN_15810 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 HEPCGN_17255 tdcF enamine/imine deaminase low > 85
Serratia liquefaciens MT49 0.19 IAI46_23825 pimeloyl-ACP methyl ester esterase BioH 0.39 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Escherichia coli ECRC62 0.19 BNILDI_02730 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 BNILDI_01325 tdcF enamine/imine deaminase — —
Escherichia coli BL21 0.19 ECD_03264 pimeloyl-ACP methyl ester carboxylesterase 0.42 ECD_02980 putative reactive intermediate deaminase low > 60
Escherichia coli BW25113 0.19 b3412 bioH carboxylesterase of pimeloyl-CoA synthesis (NCBI) 0.42 b3113 yhaR orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00291 Pimeloyl-[acyl-carrier protein] methyl ester esterase 0.42 OHPLBJKB_00587 Putative reactive intermediate deaminase TdcF low > 73
Escherichia coli ECRC99 0.19 KEDOAH_11140 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 KEDOAH_09725 tdcF enamine/imine deaminase — —
Escherichia coli ECRC101 0.19 MCAODC_07530 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 MCAODC_08935 tdcF enamine/imine deaminase — —
Escherichia coli ECRC101 0.19 OKFHMN_17000 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 OKFHMN_18420 tdcF enamine/imine deaminase — —
Escherichia coli ECRC98 0.19 JDDGAC_20630 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 JDDGAC_22055 tdcF enamine/imine deaminase — —
Escherichia coli ECRC102 0.19 NIAGMN_14770 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 NIAGMN_16185 tdcF enamine/imine deaminase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF605 Biotin synthesis protein BioH 0.43 GFF928 Endoribonuclease L-PSP low > 78
Erwinia tracheiphila SCR3 0.19 LU632_RS22975 bioH pimeloyl-ACP methyl ester esterase BioH 0.40 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Klebsiella michiganensis M5al 0.19 BWI76_RS26630 pimeloyl-[acyl-carrier protein] methyl ester esterase 0.42 BWI76_RS02985 reactive intermediate/imine deaminase low > 92
Escherichia coli ECOR27 0.19 NOLOHH_08785 bioH pimeloyl-ACP methyl ester esterase BioH 0.42 NOLOHH_10200 tdcF enamine/imine deaminase low > 57
Dickeya dadantii 3937 0.18 DDA3937_RS19645 pimeloyl-ACP methyl ester esterase BioH 0.42 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase low > 74
Shewanella oneidensis MR-1 0.18 SO4626 bioH bioH protein (NCBI ptt file) 0.73 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) low > 76
Dechlorosoma suillum PS 0.17 Dsui_2882 putative hydrolase or acyltransferase of alpha/beta superfamily 0.78 Dsui_0312 endoribonuclease L-PSP, putative — —
Pectobacterium carotovorum WPP14 0.17 HER17_RS01555 pimeloyl-ACP methyl ester esterase BioH 0.43 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Dickeya dianthicola 67-19 0.17 HGI48_RS19775 pimeloyl-ACP methyl ester esterase BioH 0.41 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase — —
Dickeya dianthicola ME23 0.17 DZA65_RS20865 pimeloyl-ACP methyl ester esterase BioH 0.41 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Lysobacter sp. OAE881 0.13 ABIE51_RS01155 pimeloyl-ACP methyl ester esterase BioH 0.64 ABIE51_RS17260 RidA family protein low > 62
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.502.1 Biotin synthesis protein BioH 0.61 Xcc-8004.1205.1 hypothetical protein 0.48 67

Not shown: 0 genomes with orthologs for PP_0364 only; 37 genomes with orthologs for PP_5303 only