Conservation of cofitness between PP_4964 and PP_4874 in Pseudomonas putida KT2440

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4964 D-erythrose 4-phosphate dehydrogenase 1.0 PP_4874 50S ribosomal protein L9 0.40 12
Pseudomonas fluorescens SBW25 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.73 PFLU_RS02650 50S ribosomal protein L9 — —
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.73 PFLU_RS02650 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase 0.81 AO356_08585 50S ribosomal protein L9 low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4656 D-erythrose-4-phosphate dehydrogenase 0.80 Pf6N2E2_3602 LSU ribosomal protein L9p — —
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase 0.80 Pf1N1B4_1398 LSU ribosomal protein L9p — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase 0.79 AO353_13225 50S ribosomal protein L9 — —
Pseudomonas sp. RS175 0.89 PFR28_04187 D-erythrose-4-phosphate dehydrogenase 0.81 PFR28_05135 50S ribosomal protein L9 — —
Pseudomonas simiae WCS417 0.88 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase 0.73 PS417_02580 50S ribosomal protein L9 — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase 0.85 PfGW456L13_139 LSU ribosomal protein L9p — —
Pseudomonas sp. S08-1 0.87 OH686_10765 erythrose-4-phosphate dehydrogenase 0.78 OH686_15935 ribosomal protein L9 — —
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.81 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.81 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas stutzeri RCH2 0.83 Psest_0329 erythrose-4-phosphate dehydrogenase 0.85 Psest_0697 ribosomal protein L9 — —
Dechlorosoma suillum PS 0.59 Dsui_1558 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 0.54 Dsui_1992 ribosomal protein L9 — —
Marinobacter adhaerens HP15 0.56 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I 0.70 HP15_628 50S ribosomal protein L9 — —
Castellaniella sp019104865 MT123 0.54 ABCV34_RS03650 glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein 0.43 ABCV34_RS02260 50S ribosomal protein L9 — —
Pantoea sp. MT58 0.51 IAI47_03685 erythrose-4-phosphate dehydrogenase 0.61 IAI47_02675 50S ribosomal protein L9 — —
Pectobacterium carotovorum WPP14 0.51 HER17_RS02685 erythrose-4-phosphate dehydrogenase 0.59 HER17_RS03905 50S ribosomal protein L9 — —
Rahnella sp. WP5 0.51 EX31_RS21405 erythrose-4-phosphate dehydrogenase 0.62 EX31_RS08745 50S ribosomal protein L9 low > 89
Escherichia coli ECRC98 0.51 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase 0.60 JDDGAC_15740 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC99 0.51 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase 0.60 KEDOAH_16055 rplI 50S ribosomal protein L9 — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase 0.60 ECOLIN_RS24390 50S ribosomal protein L9 low > 52
Escherichia coli ECRC62 0.51 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase 0.60 BNILDI_07125 rplI 50S ribosomal protein L9 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase 0.60 OHPLBJKB_03839 50S ribosomal protein L9 — —
Enterobacter sp. TBS_079 0.51 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase 0.58 MPMX20_00480 50S ribosomal protein L9 low > 85
Escherichia coli ECRC101 0.51 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase 0.60 OKFHMN_12100 rplI 50S ribosomal protein L9 — —
Escherichia coli ECOR27 0.51 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase 0.60 NOLOHH_04360 rplI 50S ribosomal protein L9 — —
Escherichia coli BW25113 0.51 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) 0.60 b4203 rplI 50S ribosomal protein L9 (NCBI) low > 76
Escherichia coli ECOR38 0.51 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase 0.60 HEPCGN_10330 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC101 0.51 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase 0.60 MCAODC_02615 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC102 0.51 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase 0.60 NIAGMN_09950 rplI 50S ribosomal protein L9 — —
Escherichia coli BL21 0.51 ECD_02758 D-erythrose 4-phosphate dehydrogenase 0.60 ECD_04070 50S ribosomal subunit protein L9 low > 60
Dickeya dianthicola 67-19 0.50 HGI48_RS18445 erythrose-4-phosphate dehydrogenase 0.62 HGI48_RS17270 50S ribosomal protein L9 — —
Dickeya dianthicola ME23 0.50 DZA65_RS19580 erythrose-4-phosphate dehydrogenase 0.62 DZA65_RS18360 50S ribosomal protein L9 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) 0.60 GFF857 LSU ribosomal protein L9p — —
Escherichia fergusonii Becca 0.50 EFB2_00979 D-erythrose-4-phosphate dehydrogenase 0.60 EFB2_04332 50S ribosomal protein L9 low > 86
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase 0.55 EX28DRAFT_3388 ribosomal protein L9 — —
Dickeya dadantii 3937 0.50 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase 0.62 DDA3937_RS17215 50S ribosomal protein L9 — —
Serratia liquefaciens MT49 0.50 IAI46_21015 erythrose-4-phosphate dehydrogenase 0.63 IAI46_01715 50S ribosomal protein L9 — —
Shewanella amazonensis SB2B 0.50 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) 0.57 Sama_3061 rplI 50S ribosomal protein L9 (RefSeq) — —
Klebsiella michiganensis M5al 0.49 BWI76_RS23985 erythrose-4-phosphate dehydrogenase 0.50 BWI76_RS02675 50S ribosomal protein L9 — —
Alteromonas macleodii MIT1002 0.49 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase 0.64 MIT1002_03816 50S ribosomal protein L9 — —
Erwinia tracheiphila SCR3 0.49 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase 0.58 LU632_RS21710 rplI 50S ribosomal protein L9 low > 74
Shewanella loihica PV-4 0.49 Shew_0753 erythrose 4-phosphate dehydrogenase (RefSeq) 0.63 Shew_3281 rplI 50S ribosomal protein L9 (RefSeq) — —
Shewanella sp. ANA-3 0.49 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) 0.56 Shewana3_0704 rplI 50S ribosomal protein L9 (RefSeq) — —
Shewanella oneidensis MR-1 0.48 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) 0.58 SO3927 rplI ribosomal protein L9 (NCBI ptt file) — —
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_02530 D-erythrose-4-phosphate dehydrogenase 0.63 CSW01_01940 50S ribosomal protein L9 — —
Acinetobacter radioresistens SK82 0.38 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase 0.67 MPMX26_01155 50S ribosomal protein L9 low > 36

Not shown: 0 genomes with orthologs for PP_4964 only; 38 genomes with orthologs for PP_4874 only